Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021099 [exp] 209 / 1e-70 AT3G09280 67 / 4e-15 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G092200 [exp] 65 / 1e-13 AT3G09280 40 / 7e-05 unknown protein Potri.016G103700 [exp] 58 / 4e-11 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017211 pacid=23165776 polypeptide=Lus10017211 locus=Lus10017211.g ID=Lus10017211.BGIv1.0 annot-version=v1.0 ATGGCTCTATCATTTCTTATTTGCTTCCTCCTTGTAGAAACACTGATGGGTCTAGCATTGGCCAGTGAAAAGGTTCAAACTTTGGTCCAACTCAACTCAG ATTTACTCTCAGAAACAAAAACCTCTGGTTTCAAACTCAGTAGAAAGCTTGGGAACCAAAACTTACAGTCATTGGTTGCTCCTCCAATTCACGGCCTTTC CATAGCGCCTAGTTCTCAGCAAGAACATGAAGGAATGCATGCTAAACATGAAAATGCTTCATCTCATGAGGTGGATATTGCTCCAGGGCAGGAAGTTCAC CAGGAGCATCATCACCGGCACCATTCAGTGGATAAATCGGTGGCCGGAGGCGGAGTGATTCTCGGGGGACTGGCCACCACCTTCTTGGTGGCGATCTTCT GTTACATTAGAGCTACTGGGAGGGATAAACCTGATACTACTATCAGCAAAGTTTGA
AA sequence Show only first row Show all	>Lus10017211 pacid=23165776 polypeptide=Lus10017211 locus=Lus10017211.g ID=Lus10017211.BGIv1.0 annot-version=v1.0 MALSFLICFLLVETLMGLALASEKVQTLVQLNSDLLSETKTSGFKLSRKLGNQNLQSLVAPPIHGLSIAPSSQQEHEGMHAKHENASSHEVDIAPGQEVH QEHHHRHHSVDKSVAGGGVILGGLATTFLVAIFCYIRATGRDKPDTTISKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09280			unknown protein		Lus10017211 [exp]	0	1
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10001906 [exp]	17.2	0.8494
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10017930 [exp]	24.5	0.7970
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Lus10037393 [exp]	27.7	0.8436
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10034374 [exp]	31.8	0.8379
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022372 [exp]	33.2	0.8351
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Lus10038025 [exp]	45.7	0.8180
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10034208 [exp]	91.1	0.7989
					Lus10038768 [exp]	98.2	0.7939
AT4G35200			Arabidopsis protein of unknown...		Lus10022635 [exp]	130.2	0.7975
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037663 [exp]	131.9	0.8037

Compare expression of checked genes

Lus10017211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.