Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75760 481 / 5e-174 ER lumen protein retaining receptor family protein (.1) AT1G19970 468 / 4e-169 ER lumen protein retaining receptor family protein (.1) AT2G21190 457 / 1e-164 ER lumen protein retaining receptor family protein (.1) AT4G38790 451 / 3e-162 ER lumen protein retaining receptor family protein (.1) AT3G25160 333 / 1e-115 ER lumen protein retaining receptor family protein (.1) AT3G25040 104 / 6e-27 ERD2B endoplasmic reticulum retention defective 2B (.1) AT1G29330 94 / 4e-23 ATERD2, AERD2, ERD2 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021097 [exp] 545 / 0 AT1G75760 475 / 8e-172 ER lumen protein retaining receptor family protein (.1) Lus10026285 [exp] 458 / 6e-165 AT4G38790 473 / 7e-171 ER lumen protein retaining receptor family protein (.1) Lus10007570 [exp] 439 / 1e-157 AT4G38790 466 / 2e-168 ER lumen protein retaining receptor family protein (.1) Lus10012176 [exp] 370 / 1e-129 AT2G21190 397 / 2e-140 ER lumen protein retaining receptor family protein (.1) Lus10042389 [exp] 335 / 4e-117 AT2G21190 355 / 5e-125 ER lumen protein retaining receptor family protein (.1) Lus10003146 [exp] 325 / 1e-112 AT3G25160 388 / 2e-137 ER lumen protein retaining receptor family protein (.1) Lus10038198 [exp] 303 / 1e-103 AT3G25160 362 / 4e-127 ER lumen protein retaining receptor family protein (.1) Lus10022763 [exp] 302 / 1e-103 AT3G25160 355 / 8e-125 ER lumen protein retaining receptor family protein (.1) Lus10025906 [exp] 287 / 4e-92 AT3G25150 363 / 4e-118 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G022300 [exp] 488 / 5e-177 AT1G75760 464 / 2e-167 ER lumen protein retaining receptor family protein (.1) Potri.004G167400 [exp] 475 / 1e-171 AT4G38790 472 / 1e-170 ER lumen protein retaining receptor family protein (.1) Potri.009G128900 [exp] 473 / 4e-171 AT2G21190 476 / 2e-172 ER lumen protein retaining receptor family protein (.1) Potri.002G246700 [exp] 328 / 1e-113 AT3G25160 400 / 5e-142 ER lumen protein retaining receptor family protein (.1) Potri.017G056000 [exp] 117 / 5e-32 AT3G25040 383 / 3e-137 endoplasmic reticulum retention defective 2B (.1) Potri.001G315800 [exp] 109 / 6e-29 AT3G25040 355 / 3e-126 endoplasmic reticulum retention defective 2B (.1) Potri.011G071200 [exp] 80 / 1e-17 AT1G29330 341 / 1e-120 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF00810 [flax] [poplar] ER_lumen_recept ER lumen protein retaining receptor
Representative CDS sequence Show only first row Show all	>Lus10017213 pacid=23165861 polypeptide=Lus10017213 locus=Lus10017213.g ID=Lus10017213.BGIv1.0 annot-version=v1.0 ATGAAGGCGACGAAGCGGCCGATCCACGCTCTGGCGACATGGGTTCGCCGGCAACCACCAAAGATGAAGGCTTTTCTAGGTGTATTGTCTGCCATTGTAG CTCTTTTTTTCCTCCGTATGATTGTTCATGATCACGACAATCTTTTCGTTGCTTCCGAGGCTGTTCACTCCATCGGCATCTCCGTTCTTATCTATAAGCT CATGAAAGAGAAGACGTGTGCTGGGCTGTCGTTGAAATCTCAGGAGTTGACAGCTTTGTTTTTAGCCGTTAGACTCTACTGCAGCTTTGTGATGGAGTAT GATATACACACGCTACTGGATTCAGCCACACTTGTGGCTACTCTTTGGGTAATTTACACCATCCGGTTCACCTTGAAGTTCAGTTACATGCAGGAGAAGG ATAACTTTGCCATTTACTTTGTGGTTGGACCGTGCGCCTTGCTGTCTTTCCTTATTCATCCGACGACTCAACACCATTTCTTCAACAGAATCTGTTGGGC ATTCTGTGTGTATCTTGAAGCTGTGTCTGTGTTGCCTCAACTCAGGGTGATGCAGAACACAAAGATCGTTGAGCCCTTCACGGCACATTATGTATTTGCC CTTGGAGTTGCAAGGTTCTTGAGCTGTGCACATTGGGTCCTTCAGGTACTTGATAGTCGAGGTCACCTGCTCACAGCCCTGGGCTACGGGATGTGGCCTC CGATGGTCCTACTTTCGGAGATCGTTCAAACCTTCATCCTAGCAGATTTCTGCTACTACTATGTCAAGAGTCTAGTAGGGGGGCAACTGGTTCTCCGTCT CCCATCAGGAGTGGTGTAA
AA sequence Show only first row Show all	>Lus10017213 pacid=23165861 polypeptide=Lus10017213 locus=Lus10017213.g ID=Lus10017213.BGIv1.0 annot-version=v1.0 MKATKRPIHALATWVRRQPPKMKAFLGVLSAIVALFFLRMIVHDHDNLFVASEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTALFLAVRLYCSFVMEY DIHTLLDSATLVATLWVIYTIRFTLKFSYMQEKDNFAIYFVVGPCALLSFLIHPTTQHHFFNRICWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFA LGVARFLSCAHWVLQVLDSRGHLLTALGYGMWPPMVLLSEIVQTFILADFCYYYVKSLVGGQLVLRLPSGVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75760			ER lumen protein retaining rec...		Lus10017213 [exp]	0	1
AT3G63170			Chalcone-flavanone isomerase f...		Lus10022046 [exp]	1.7	0.8508
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10042574 [exp]	3.5	0.8464
AT2G40980			Protein kinase superfamily pro...		Lus10015685 [exp]	6.0	0.8327
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10004263 [exp]	6.6	0.8487
AT5G60050			BTB/POZ domain-containing prot...		Lus10038475 [exp]	8.5	0.7909
AT3G19540			Protein of unknown function (D...		Lus10024790 [exp]	8.7	0.8320
AT4G38660			Pathogenesis-related thaumatin...		Lus10025055 [exp]	9.9	0.8299
AT5G66330			Leucine-rich repeat (LRR) fami...		Lus10028359 [exp]	12.7	0.8241
AT3G25580			Thioredoxin superfamily protei...		Lus10013889 [exp]	13.9	0.8294
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10023115 [exp]	15.7	0.8316

Compare expression of checked genes

Lus10017213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.