Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19980 174 / 3e-51 cytomatrix protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021095 [exp] 571 / 0 AT1G19980 195 / 3e-59 cytomatrix protein-related (.1) Lus10034526 [exp] 260 / 4e-85 AT1G19980 137 / 8e-38 cytomatrix protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G239500 [exp] 248 / 8e-80 AT1G19980 246 / 4e-79 cytomatrix protein-related (.1) Potri.002G022200 [exp] 240 / 1e-76 AT1G19980 203 / 2e-62 cytomatrix protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017215 pacid=23165807 polypeptide=Lus10017215 locus=Lus10017215.g ID=Lus10017215.BGIv1.0 annot-version=v1.0 ATGGGCAGCGGGAAGAAGCGGTCGGAGGACTCTTCGGATCGAGCAAAGTGGGATGTGATATATGCCAGTCTGGTAAAACTCATCAAGAAGCAACAGTGCC AGCTTGAGACTCTGCTCAGCCAGAGGGAATTCCTTGAAGATCACCTGAATAAGCAGAACGAAACTTTGGTTTCCAATCTGCGAATCTACGAACGTCATTT GTCCGAATTGAAGGCACGCCTGGAAGAGAAAGAGATGGAGATACTGACGGAGGCTGCTAAATCTGAATTGCTGGTGGGATTAAAGCAGAGAGAAGCTTTG GTTCATAAAGTGAAATTAGAAGAAACAGAAGATGAATTGGCAGATTTCAGGGCCTTGTTTGACTACCTGTCTGCTAGCCTAAAAAAAGCTGATGGGAGCA AGAGGCACACAAGGTCATCATCTTCTGCCTCCAAGACGACAAATACAGAACTCGAAAGGCTTAAGGTCAAGTGTGAGAAGCTTGTATCCGAGAAGGACAA GATCTCGAACGAGAAGAGCTTCATATGGAATCAATTCAACAGGTTGGAAACCGAACTAACCCAAAAGCTCAACGAAAAGCAAACTGAAGTCGATGAAACT AAAAATAAGGTAGCTCAAGTCCTCACCACAGTCGAGGAACTTCAATCTTCCAACAACGACAAGGATGATACCATTGTAAGTCTGAGAACAAGAATGTCCG AGATGGTAGAAGAGTCGAATCAGTGGCAAGTGATGGTGTCCAAGTTGTCACAAGAGTTGGAAGCTCTGAAGAAGCAGAAGTCCGAAGCGGTAATTACACC GGTTTTAAGAAGCTGCAAGGAAGTAGCTACAGCTTCAGCCAAGGAAAGTGGTAAAGAAGGAAGAAGAAGACTCCGCGGGTGCAGCATAACTGTGAAGAAA GAAAACTCATCGTCTTCTGCTGAGAATCTAAGACCGAATGGCAAGAGCAGCAGAAGGTCTAAGAGAAAGGAGAGTGATGATGATGATGATGGTGTTATCA TACTGGAATCTCCACCAAAACTGTTCACTGGTTCCTTCCGAGTCCCCAAGCTGAAGATCTCCTCAACTCCTCTCTAG
AA sequence Show only first row Show all	>Lus10017215 pacid=23165807 polypeptide=Lus10017215 locus=Lus10017215.g ID=Lus10017215.BGIv1.0 annot-version=v1.0 MGSGKKRSEDSSDRAKWDVIYASLVKLIKKQQCQLETLLSQREFLEDHLNKQNETLVSNLRIYERHLSELKARLEEKEMEILTEAAKSELLVGLKQREAL VHKVKLEETEDELADFRALFDYLSASLKKADGSKRHTRSSSSASKTTNTELERLKVKCEKLVSEKDKISNEKSFIWNQFNRLETELTQKLNEKQTEVDET KNKVAQVLTTVEELQSSNNDKDDTIVSLRTRMSEMVEESNQWQVMVSKLSQELEALKKQKSEAVITPVLRSCKEVATASAKESGKEGRRRLRGCSITVKK ENSSSSAENLRPNGKSSRRSKRKESDDDDDGVIILESPPKLFTGSFRVPKLKISSTPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19980			cytomatrix protein-related (.1...		Lus10017215 [exp]	0	1
AT5G51170			unknown protein		Lus10035151 [exp]	3.7	0.8412
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10036442 [exp]	10.5	0.8374
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	10.6	0.8020
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001923 [exp]	12.4	0.8201
AT2G37680		PAT3, FRY1, FHY...	unknown protein		Lus10003966 [exp]	16.2	0.7919
AT1G09010			glycoside hydrolase family 2 p...		Lus10000159 [exp]	16.3	0.7938
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003074 [exp]	19.6	0.7945
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Lus10034164 [exp]	19.6	0.7970
AT1G53330			Pentatricopeptide repeat (PPR)...		Lus10036019 [exp]	20.1	0.7817
					Lus10023198 [exp]	22.6	0.7189

Compare expression of checked genes

Lus10017215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.