Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017216 pacid=23165863 polypeptide=Lus10017216 locus=Lus10017216.g ID=Lus10017216.BGIv1.0 annot-version=v1.0 ATGGATAGACTATGGATGAACTCAGAGCAGCAAACCTTCCATCAACATATTCCGAACCCTGAAACAAGCATGAACTGGGTAAGAGAGAAAAGAGCCTCCT CAACATGGGATGGAAGCTGGAGAAACCAAACTCTGGCTTCCATATCTCCACCGCCATTTCCTCTGCTAGCCCTTTTCCTCATAATCGTCTTCCTTGTCTA TTATTCTCGTTCCAACAATAATTACAGCCAAGCTTCTACCAACTTCAAGTTGCTCCTTGTGTTACTTCCCCTGCTCATAATCTTCCTGGCTCATCTTCTG TCCAAGTTTGAGAGCTTTGCTAACCCCCAAACGAAGCCAGAGTACTACGGCGGCGAGGTTGCCGAACAGCAGCGACAACGTTGGGAGTTGCCCTGGGGTG TGCTGCTCATGGTGTTTTTTGTTCTTTTGATGGTCTCTTTCCATCCCTCCTTCAATTAA
AA sequence Show only first row Show all	>Lus10017216 pacid=23165863 polypeptide=Lus10017216 locus=Lus10017216.g ID=Lus10017216.BGIv1.0 annot-version=v1.0 MDRLWMNSEQQTFHQHIPNPETSMNWVREKRASSTWDGSWRNQTLASISPPPFPLLALFLIIVFLVYYSRSNNNYSQASTNFKLLLVLLPLLIIFLAHLL SKFESFANPQTKPEYYGGEVAEQQRQRWELPWGVLLMVFFVLLMVSFHPSFN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017216 [exp]	0	1
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10018993 [exp]	13.4	0.7154
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Lus10030610 [exp]	20.9	0.7181
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10002399 [exp]	38.3	0.7045
					Lus10012564 [exp]	57.3	0.6589
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10025151 [exp]	73.2	0.6328
AT3G56800		ACAM-3, CAM3	calmodulin 3 (.1)		Lus10042597 [exp]	92.5	0.6298
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10012516 [exp]	94.9	0.6313
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10039946 [exp]	119.9	0.5807
AT2G24050		eIFiso4G2	eukaryotic translation Initiat...		Lus10035812 [exp]	187.0	0.5665
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10031389 [exp]	220.5	0.5694

Compare expression of checked genes

Lus10017216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.