Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75780 851 / 0 TUB1 tubulin beta-1 chain (.1) AT1G20010 844 / 0 TUB5 tubulin beta-5 chain (.1) AT5G62700 838 / 0 atgcp3, TUB3 tubulin beta chain 3 (.1) AT5G62690 838 / 0 TUB2 tubulin beta chain 2 (.1) AT5G12250 836 / 0 TUB6 beta-6 tubulin (.1) AT5G23860 830 / 0 TUB8, b-TUB tubulin beta 8 (.1.2) AT2G29550 828 / 0 TUB7 tubulin beta-7 chain (.1) AT4G20890 821 / 0 TUB9 tubulin beta-9 chain (.1) AT5G44340 821 / 0 TUB4 tubulin beta chain 4 (.1) AT5G19780 368 / 4e-124 TUA5 tubulin alpha-5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021094 [exp] 875 / 0 AT1G75780 857 / 0.0 tubulin beta-1 chain (.1) Lus10038458 [exp] 841 / 0 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1) Lus10026813 [exp] 841 / 0 AT5G12250 867 / 0.0 beta-6 tubulin (.1) Lus10023348 [exp] 841 / 0 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1) Lus10036069 [exp] 841 / 0 AT5G12250 914 / 0.0 beta-6 tubulin (.1) Lus10040712 [exp] 836 / 0 AT5G23860 923 / 0.0 tubulin beta 8 (.1.2) Lus10016448 [exp] 836 / 0 AT5G23860 921 / 0.0 tubulin beta 8 (.1.2) Lus10039231 [exp] 828 / 0 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10027476 [exp] 828 / 0 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G464400 [exp] 846 / 0 AT5G62700 850 / 0.0 tubulin beta chain 3 (.1) Potri.011G162500 [exp] 841 / 0 AT5G23860 847 / 0.0 tubulin beta 8 (.1.2) Potri.005G239900 [exp] 841 / 0 AT1G20010 840 / 0.0 tubulin beta-5 chain (.1) Potri.016G033200 [exp] 840 / 0 AT5G12250 862 / 0.0 beta-6 tubulin (.1) Potri.002G021800 [exp] 837 / 0 AT1G20010 838 / 0.0 tubulin beta-5 chain (.1) Potri.006G035400 [exp] 837 / 0 AT5G12250 860 / 0.0 beta-6 tubulin (.1) Potri.009G067100 [exp] 835 / 0 AT5G12250 852 / 0.0 beta-6 tubulin (.1) Potri.001G272800 [exp] 835 / 0 AT5G62700 857 / 0.0 tubulin beta chain 3 (.1) Potri.012G047600 [exp] 833 / 0 AT5G12250 847 / 0.0 beta-6 tubulin (.1) Potri.001G272700 [exp] 833 / 0 AT5G62700 849 / 0.0 tubulin beta chain 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0442 [flax] [poplar] Tubulin_C PF03953 [flax] [poplar] Tubulin_C Tubulin C-terminal domain CL0566 [flax] [poplar] Tubulin PF00091 [flax] [poplar] Tubulin Tubulin/FtsZ family, GTPase domain
Representative CDS sequence Show only first row Show all	>Lus10017217 pacid=23165817 polypeptide=Lus10017217 locus=Lus10017217.g ID=Lus10017217.BGIv1.0 annot-version=v1.0 ATGAGAGAAATCCTGCACATCCAGGGCGGCCAGTGCGGCAACCAAATCGGCTCCAAGTTTTGGGAGGTTATCTGCGACGAGCATGGCGTCGATCCTACGG GGAGGTACAACGGCGACGAGTCCTCCGATGTCCAGCTCGAGAGGATCAATGTCTACTACAATGAGGCTTCAGGCGGACGCTACGTCCCTCGCGCTGTGCT CATGGATCTCGAGCCAGGTACTATGGACAGCATCAGATCCGGTCCGTATGGTCAGATCTTCAGGCCCGATAACTTCGTCTTCGGCCAGTCTGGCGCCGGC AACAACTGGGCGAAAGGTCATTACACGGAGGGAGCGGAGCTGATCGACTCTGTCCTGGATGTCGTTCGTAAGGAGGCGGAAAACTGTGATTGCTTGCAAG GCTTTCAGGTATGCCATTCGCTTGGAGGGGGCACAGGCTCTGGCATGGGAACACTTCTGATCTCTAAGATCAGAGAGGAGTATCCTGACAGGATGATGCT TACATTCTCGGTCTTCCCTTCACCTAAGGTCTCAGACACTGTTGTTGAGCCTTATAATGCCACCCTCTCAGTGCACCAGCTGGTGGAGAATGCAGATGAA TGCATGGTCCTTGACAATGAAGCACTGTATGATATTTGCTTCCGGACACTAAAACTCAGCACTCCAAGCTTTGGAGATTTGAACCACTTGATCTCAGCAA CAATGAGCGGTGTAACATGTTGTCTGAGGTTCCCAGGGCAGCTGAATTCAGACCTGAGGAAGCTAGCTGTGAACCTGATCCCATTCACTCGCCTTCATTT CTTCATGGTGGGATTTGCGCCACTGACATCCCGTGGATCCCAGCAGTACATATCCCTGACAGTCCCGGAGCTGACTCAGCAGATGTGGGATTCAAAGAAC ATGATGTGTGCTGCAGACCCAAGGCACGGGCGATACTTGACAGCATCAGCCATGTTCAGAGGGAAGATGAGTACGAAGGAGGTTGACGAACAGATGATGA ATGTGCAGAACAAGAACTCATCCTACTTTGTGGAGTGGATCCCCAACAACGTAAAGTCGAGTGCTTGTGACATACCACCAAGGGGTCTGAAGATGTCATC AACCTTTGTTGGGAACTCGACATCGATTCAAGAGATGTTCAGGAGAGTGAGCGAGCAGTTCACAGCTATGTTCAGGCGCAAGGCCTTCTTGCACTGGTAC ACTGGAGAAGGTATGGATGAGATGGAGTTCACAGAGGCCGAGAGCAACATGAACGATCTCGTCGCAGAGTACCAGCAATACCAAGATGCGACTGCTGATG ACGAGGAAGTCGAGTACGAGGAGGAGCTCGAAGATTAA
AA sequence Show only first row Show all	>Lus10017217 pacid=23165817 polypeptide=Lus10017217 locus=Lus10017217.g ID=Lus10017217.BGIv1.0 annot-version=v1.0 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDESSDVQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAG NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADE CMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFTRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDSKN MMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSACDIPPRGLKMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY TGEGMDEMEFTEAESNMNDLVAEYQQYQDATADDEEVEYEEELED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10017217 [exp]	0	1
AT1G79760		DTA4	downstream target of AGL15-4 (...		Lus10025825 [exp]	1.0	0.8421
AT2G36710			Pectin lyase-like superfamily ...		Lus10027737 [exp]	2.4	0.8412
AT2G41640			Glycosyltransferase family 61 ...		Lus10018048 [exp]	5.9	0.8338
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10037457 [exp]	7.5	0.8218
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10008715 [exp]	13.2	0.7718
AT1G51540			Galactose oxidase/kelch repeat...		Lus10033376 [exp]	13.4	0.7764
AT1G35780			unknown protein		Lus10020921 [exp]	13.6	0.8298
AT3G42050			vacuolar ATP synthase subunit ...		Lus10005658 [exp]	13.8	0.8179
AT3G07210			unknown protein		Lus10025908 [exp]	17.0	0.8369
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10015226 [exp]	17.9	0.8072

Compare expression of checked genes

Lus10017217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.