Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14103 45 / 5e-05 F-box/RNI-like superfamily protein (.1.2) AT3G50710 42 / 0.0005 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G59150 42 / 0.0006 F-box/RNI-like superfamily protein (.1) AT3G58960 42 / 0.0006 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G04230 42 / 0.0008 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT4G26340 41 / 0.001 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030905 [exp] 162 / 2e-44 ND 40 / 0.005 Lus10011549 [exp] 139 / 3e-36 AT5G67620 90 / 1e-20 unknown protein Lus10019266 [exp] 80 / 2e-16 ND / Lus10030519 [exp] 77 / 2e-16 ND / Lus10029003 [exp] 73 / 1e-13 AT3G49030 57 / 3e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Lus10037289 [exp] 73 / 1e-13 AT5G02920 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10003696 [exp] 62 / 8e-11 AT3G51530 52 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029083 [exp] 63 / 2e-10 AT1G67390 54 / 6e-08 F-box family protein (.1) Lus10034290 [exp] 59 / 2e-09 AT5G02910 53 / 2e-07 F-box/RNI-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002001 [exp] 52 / 3e-07 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G104200 [exp] 52 / 4e-07 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 51 / 8e-07 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G121500 [exp] 51 / 8e-07 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.011G121400 [exp] 51 / 9e-07 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.001G337200 [exp] 50 / 2e-06 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.017G146500 [exp] 50 / 2e-06 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.017G146400 [exp] 50 / 3e-06 AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1) Potri.013G146800 [exp] 49 / 3e-06 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 48 / 8e-06 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017218 pacid=23165866 polypeptide=Lus10017218 locus=Lus10017218.g ID=Lus10017218.BGIv1.0 annot-version=v1.0 ATGCAAGAAAGCGAGAGCACGATGCCGCAACCAATTGACCGAGTCTCCGATTTGCCTCCAGAAATCATCCACGGAATTGTCTCCCGCCTCGATTGGAGCG AAGCTGCTCGGACCTGCATTCTATCGAAAACATGGTACGGCCGATTCTGGCGCTCTTACCCCGCGGTGGAGTACCATCACCACTCCGACTCCGACGATGA AAGTAAACGAACAGGCAGATTTCGAAGCTTCGCGGTCTCTTCCTGCAAGAGGCTGTTACTCTACCACATACCGAATGGGACAGCCCTGACAGCTTTGAGG ATCTCGGTGCGAGGAGGAGGAGAGAGCCTCCTCGTCCTCCTCCACCGCTTTCTAGATTTCATATCCTCATTCTCGGCCTATTGCGGATCCCCTCTCGAGG TCTCGTTTGAAACGGACGCCTGCTTTACTCTCCCCGAAGCAGTGTTCCGTTACGACCGCACGCTAGTCCTCAACCTGGGGGGCTTCAATTTCCAAAACCT TGACATATGCGACGCAGTTTTCCCCAAATTGAAATCTGCCAGGATCGAACTAGGGACAACGACTTTCTCGATCGGCTCGATCCAGCTCACGTACTCTCCT TCCTTAGAGAGTCTCGAATTCGATCACTTGGTTCTAAACATAGCGTCGCCTTACTCTGCTCCCAACCTCAGAACCGTACGGATTTCCAACTACAGGGAGG CTGCTGCGACGCAACGGGGAATTATCGACAAACTGATTCGCAACCTGCCGTCTCTCGAGTGTCTCTCTCTCGAGAAATCCATGTTTGCCAGCGAGAGCCG CTGGTTGATGATTTCGTCTCCCATGCTTAAGGAGTTGAGCTTCATTGATTGTTGGTGGTATGATGATCATAGCTGGAGTGTGTCTAAAGAGATTGAAGTT GATGCTCCTAATCTGGAATTGTTCCACTATACTTATGAGAATGTCCAGGAAGTTGCGATAACCGGGTTAAAGATGGTCGAAGTGGCGCGCAAGTTCAGGT TTGTGGGTGTCGTTCGTGGCTGGAAACTCGAGGAGGAGGATTGTAATGGTACGGTGTTATGGTATGGTGGAATTGTGGAGTTTATTGAAAGCCAATTTCA AAACATGGGGTTGAAGGTGCGTGAGGCAGAGTGTTTAGGAACAGAGGATCTTCAACTTGTTATAGAATAG
AA sequence Show only first row Show all	>Lus10017218 pacid=23165866 polypeptide=Lus10017218 locus=Lus10017218.g ID=Lus10017218.BGIv1.0 annot-version=v1.0 MQESESTMPQPIDRVSDLPPEIIHGIVSRLDWSEAARTCILSKTWYGRFWRSYPAVEYHHHSDSDDESKRTGRFRSFAVSSCKRLLLYHIPNGTALTALR ISVRGGGESLLVLLHRFLDFISSFSAYCGSPLEVSFETDACFTLPEAVFRYDRTLVLNLGGFNFQNLDICDAVFPKLKSARIELGTTTFSIGSIQLTYSP SLESLEFDHLVLNIASPYSAPNLRTVRISNYREAAATQRGIIDKLIRNLPSLECLSLEKSMFASESRWLMISSPMLKELSFIDCWWYDDHSWSVSKEIEV DAPNLELFHYTYENVQEVAITGLKMVEVARKFRFVGVVRGWKLEEEDCNGTVLWYGGIVEFIESQFQNMGLKVREAECLGTEDLQLVIE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14103			F-box/RNI-like superfamily pro...		Lus10017218 [exp]	0	1
AT5G20140			SOUL heme-binding family prote...		Lus10040682 [exp]	1.0	0.8190
AT4G18690			unknown protein		Lus10015276 [exp]	1.4	0.8005
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10009775 [exp]	3.5	0.7254
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Lus10036422 [exp]	6.7	0.7389
AT1G11340			S-locus lectin protein kinase ...		Lus10007611 [exp]	11.9	0.7780
AT5G45360			F-box family protein (.1)		Lus10007767 [exp]	12.0	0.7564
AT5G52780			Protein of unknown function (D...		Lus10038849 [exp]	16.6	0.7741
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10013395 [exp]	17.1	0.7750
AT5G46090			Protein of unknown function (D...		Lus10013971 [exp]	20.7	0.7355
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016498 [exp]	26.2	0.6911

Compare expression of checked genes

Lus10017218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.