Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76970 100 / 1e-25 Target of Myb protein 1 (.1) AT1G21380 98 / 1e-24 Target of Myb protein 1 (.1) AT4G32760 70 / 1e-14 ENTH/VHS/GAT family protein (.1.2) AT3G08790 69 / 3e-14 ENTH/VHS/GAT family protein (.1) AT2G38410 62 / 6e-12 ENTH/VHS/GAT family protein (.1) AT5G01760 62 / 7e-12 ENTH/VHS/GAT family protein (.1) AT5G63640 53 / 6e-09 ENTH/VHS/GAT family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028649 [exp] 173 / 2e-51 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10018948 [exp] 157 / 3e-47 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1) Lus10029739 [exp] 112 / 1e-29 AT1G21380 518 / 0.0 Target of Myb protein 1 (.1) Lus10042770 [exp] 111 / 2e-29 AT1G21380 514 / 4e-180 Target of Myb protein 1 (.1) Lus10022140 [exp] 87 / 1e-20 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10025264 [exp] 62 / 7e-12 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10009082 [exp] 62 / 1e-11 AT5G05570 358 / 6e-106 transducin family protein / WD-40 repeat family protein (.1.2) Lus10022753 [exp] 60 / 4e-11 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10014155 [exp] 60 / 5e-11 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G184900 [exp] 117 / 1e-31 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.002G075500 [exp] 110 / 5e-29 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.006G241000 [exp] 82 / 9e-19 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.018G039100 [exp] 81 / 1e-18 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.006G106500 [exp] 62 / 6e-12 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.016G131900 [exp] 61 / 1e-11 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.T005401 [exp] 55 / 2e-09 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.T010700 [exp] 55 / 2e-09 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.004G138600 [exp] 43 / 2e-05 AT5G63640 447 / 1e-155 ENTH/VHS/GAT family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03127 [flax] [poplar] GAT GAT domain
Representative CDS sequence Show only first row Show all	>Lus10017220 pacid=23165775 polypeptide=Lus10017220 locus=Lus10017220.g ID=Lus10017220.BGIv1.0 annot-version=v1.0 ATGGAAATTCTCGGTGCCTTGGATCCTAAGAAACCTGAGGGTTTGAATGAAGAGGTGATTGTAGACCTTGTTGATCAATGCCGTTCATATCAAACAAGGG TTAGCGATCAATGCCGTTTATATCAAACAAGGGTTAGGCTTCTTGTAGATGAGGAACTTCTAGCACAAGGATTATCCCTCAACGATACCTTGCAGCGTGT CATTCGTCGCCATGATGACATCGCTAATGGAACTGCTGCTGCTCAAGTGGTAGAGACGCAACGAGAGACTCCACTCGTGCCGCTTGTTAATGTTAACCAT GCGGAGGATGATGATGAATCAGATGATGATCTCTCCCAGCTGGCTCGTATATTAGTTACTGCATCTACTTGTTTTTATGATCCATTTCGAAGAGAACTTG TTCTTACTAACCTTAAGTGA
AA sequence Show only first row Show all	>Lus10017220 pacid=23165775 polypeptide=Lus10017220 locus=Lus10017220.g ID=Lus10017220.BGIv1.0 annot-version=v1.0 MEILGALDPKKPEGLNEEVIVDLVDQCRSYQTRVSDQCRLYQTRVRLLVDEELLAQGLSLNDTLQRVIRRHDDIANGTAAAQVVETQRETPLVPLVNVNH AEDDDESDDDLSQLARILVTASTCFYDPFRRELVLTNLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76970			Target of Myb protein 1 (.1)		Lus10017220 [exp]	0	1
AT2G30690			Protein of unknown function, D...		Lus10014743 [exp]	3.5	0.7889
AT5G55500		ATXYLT	"beta-1,2-xylosyltransferase",...		Lus10014902 [exp]	3.7	0.8275
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10002628 [exp]	6.3	0.8150
AT5G25820			Exostosin family protein (.1)		Lus10023927 [exp]	6.9	0.8082
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10039935 [exp]	7.7	0.8112
AT2G47790			Transducin/WD40 repeat-like su...		Lus10003441 [exp]	9.2	0.7915
AT1G19835			Plant protein of unknown funct...		Lus10032386 [exp]	14.1	0.7868
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10011716 [exp]	15.7	0.7885
AT1G15060			Uncharacterised conserved prot...		Lus10000099 [exp]	20.8	0.7243
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10006596 [exp]	21.4	0.7664

Compare expression of checked genes

Lus10017220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.