Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03475 558 / 0 LIN2, HEMF1, ATCPO-I LESION INITIATION 2, Coproporphyrinogen III oxidase (.1) AT3G58460 556 / 0 ATRBL15 RHOMBOID-like protein 15 (.1.2) AT4G03205 247 / 6e-76 HEMF2 Coproporphyrinogen III oxidase (.1.2) AT3G17611 73 / 2e-13 ATRBL14 RHOMBOID-like protein 14 (.1.2.3) AT3G59520 55 / 7e-08 ATRBL13 RHOMBOID-like protein 13 (.1) AT2G29050 47 / 4e-05 ATRBL1 RHOMBOID-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021092 [exp] 756 / 0 AT3G58460 535 / 0.0 RHOMBOID-like protein 15 (.1.2) Lus10021087 [exp] 592 / 0 AT1G03475 599 / 0.0 LESION INITIATION 2, Coproporphyrinogen III oxidase (.1) Lus10014591 [exp] 87 / 6e-17 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10032095 [exp] 81 / 3e-16 AT3G17611 339 / 2e-116 RHOMBOID-like protein 14 (.1.2.3) Lus10008156 [exp] 71 / 6e-13 AT3G59520 447 / 8e-161 RHOMBOID-like protein 13 (.1) Lus10029817 [exp] 70 / 2e-12 AT5G17290 462 / 4e-164 AUTOPHAGY 5, autophagy protein Apg5 family (.1) Lus10000741 [exp] 63 / 7e-10 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 57 / 5e-08 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10027436 [exp] 45 / 0.0002 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G197900 [exp] 625 / 0 AT3G58460 561 / 0.0 RHOMBOID-like protein 15 (.1.2) Potri.011G023900 [exp] 547 / 0 AT1G03475 593 / 0.0 LESION INITIATION 2, Coproporphyrinogen III oxidase (.1) Potri.010G004600 [exp] 67 / 1e-11 AT3G17611 352 / 4e-121 RHOMBOID-like protein 14 (.1.2.3) Potri.007G130300 [exp] 52 / 8e-07 AT3G59520 441 / 1e-158 RHOMBOID-like protein 13 (.1) Potri.017G027800 [exp] 50 / 2e-06 AT3G59520 434 / 1e-155 RHOMBOID-like protein 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain CL0214 [flax] [poplar] PF01218 [flax] [poplar] Coprogen_oxidas Coproporphyrinogen III oxidase
Representative CDS sequence Show only first row Show all	>Lus10017221 pacid=23165823 polypeptide=Lus10017221 locus=Lus10017221.g ID=Lus10017221.BGIv1.0 annot-version=v1.0 ATGCACCTCCGATCAAAAGTTGGGATAGCATTTCTTATATCAACAGCCCACTTGAGATCCAGAGAGAAGAAGGTAAATGCTTCACCTTACACGATGCCAA CTAAAGCCCTCCTGCCAGAACTTTTCGGCAAGAAATCATCGCTGAACGAAGAAAAACGTACCGAAGCTGAAGAAAACATTGTCCCTAAAGAAGATGCTGA TAGCAATCGAATGGTTGGACAAGGAGACGGAACAGTAAGCAAGTCAATGGCAGTTGAGGTTCTGCCGGGTCAGGTCGACAACCCGCGGATGGTGGCGTTG GAGTTCCAGAAAGTGGAGTTAGAGTGGTGGCTAGACGGGAGCTGCGCTATTAACGGGAGTAGGTCGTGCTCCCAGCTTGCTGATTACTGCCCTTCAATGA GGTCTTCTTCTTCGGCAAGAGCGCTGGATTGTTCAAAGGTTACATGGAGCCAGAAGATCTGTCCGATTGCAAACGATCGACGACAGTGCCGGTTGCCGGT GCTTTCCGACTCCCTGGAAAACCACCATGCAAGCTTGTCTACAAGAGTTGGGCAGTGGTGGGAAAGCATTCCTTTCCTTACTTCTGCAGTGGTGGTTGTT TGTGGGGCTATCTACTTGGTCTGCCTCTTGTTTGGATATGACTCCTTTTATGAAATCTGTTTCCTGCCATCTGCTGTTATATCAAGATTTCAAGTTTTCA GGATCTTTACTTCCATTGTATTTCATGGCTCCCTGCTTCATGTTTTTTTCAACATGCTGGCAATGGTGCCTTTGGGTTCAGAACTGGAGAGAATCATGGG ATCTGTTCGGTTGTTCTTTGTGACCATTTTGTTGGCTATAAGCAATGCGATTCTTCATCTTTTTCTAGCCCTGTTAGTAGCCCACAACCCCTTCCGCCCA TATCCGGTGCTGATGGATGAGTGTGCAATAGGCTTCTCGGGAATCTTATTTTCCATGATTGTAATAGAAACAAGTTTGAGTGGAGCCCAGACTAGAAGTG TCTTTGGCCTCTTTAATGTTCCTGCTAAGTGGTATGCATTTATCCTGTTGGTAGTATTCCAGATTCTTATGACAAATGTTTCACTGCTCGGACATCTGTG CGGCATTTTGTCTGGATTTGCATATACCTATGGTTTATTCAACTTGCTTATACCTGGAACATCCTTCTACTCTGGAATCGAGGCTTCCCCCTGGCTTACT TCTTGTGTGAGGCGACCTAAGTTCATTTTGTGTACTGGAGGAAATGCTACTGGATATATCCCCACATATTCTGGCCAGAATACATCTTCCAGTGGAATTT TGTCTGGAAATATGTGGAGAAACATTTCGTCATGGATGCCACAGCGAGAAACATCTTCTCAGTCAATGCCAGAGCAAGACAGCAGGTTTCCTGGGAGAGC AAGAACTCTCGCATCCGCACAAAGTCCAATCACTCCATCTGGAAACTCGGATGCAAACCTGCAGGCTAGATTACTGGATGATACCGCCTCAGACCATTCA TCGCATACAGCTGAAAGTGTTTCAAGACAGCAACTTCCAGATGGAAGGAGGTCAGTAACGGATAATGCAGCTGCTCTAGGTAACCCTGCTCCTCACCAGA CTCCAGTTGTTTCTGATGATCAAATACAGAAACTTGTATCCATGGGTTTTGAAAAGACGCAGGTCGAGGTAGCTCTGGCGGCTGCTGATGGAGATATTAA CGTTGCAGTCGAAATTCTTATGAGCCAGCAGGAGGATGTTTGGTCTATACCTGGAGGCGGTGGAGGCATTAGCAGAGTGTTGCAAGACGGTGCCGTATTT GAGAAGGCCGGAGTCAATGTCTCCGTCGTCTATGGCGTTATGCCTCCTGAAGCTTATAGAGCTGCCAGGGCTGCTTCTCCTGATCAGAAACCTGGTCCAA TCCCATTTTTCGCAGCTGGAATCAGCTCTGTGTTGCATCCCAAGAATCCTTTTGCTCCGACATTGCATTTTAACTATAGATATTTCGAGACTGATGCTCC TAAAGATGCGCCTGGAGCTCCTCGGCAATGGTGGTTTGGAGGTGGGACTGACCTTACTCCAGCTTATATCTTTGACGATGATGTGAAGCATTTTCATTCG ATTCAAAAGCAGGCATGTGACAAGTTTGATCCCTCCTTCTATCCACGGTTCAAAAAATGGTGTGACGATTATTTCTATATCAAGCACCGAGGTGAGAGGC GAGGGCTTGGGGGTATATTCTTTGACGATCTTAACGATTACGATCAAGAAATGCTTCTTTCGTTCGCAACTGAGTGTGCGAATTCTGTCATACCTGCATA TGTTCCAATTGTGGAGAGAAGGAAGGATACGCCATTTACCGACCAGCAACTAGCATGGCAACAGTTGCGTAGAGGCCGCTACGTAGAATTCAACCTGGTC TACGACAGGGGCACAACGTTCGGACTCAAAACAGGAGGCCGAATAGAGAGTATTCTCGTTTCATTGCCACTCTCTGCCCGGTGGGAGTATGATCATAAAC CAGAAGAAGGTAGTGAAGAATGGAATCTGCTGGATGCTTGTATCAACCCTAGAGAATGGGTCTAA
AA sequence Show only first row Show all	>Lus10017221 pacid=23165823 polypeptide=Lus10017221 locus=Lus10017221.g ID=Lus10017221.BGIv1.0 annot-version=v1.0 MHLRSKVGIAFLISTAHLRSREKKVNASPYTMPTKALLPELFGKKSSLNEEKRTEAEENIVPKEDADSNRMVGQGDGTVSKSMAVEVLPGQVDNPRMVAL EFQKVELEWWLDGSCAINGSRSCSQLADYCPSMRSSSSARALDCSKVTWSQKICPIANDRRQCRLPVLSDSLENHHASLSTRVGQWWESIPFLTSAVVVV CGAIYLVCLLFGYDSFYEICFLPSAVISRFQVFRIFTSIVFHGSLLHVFFNMLAMVPLGSELERIMGSVRLFFVTILLAISNAILHLFLALLVAHNPFRP YPVLMDECAIGFSGILFSMIVIETSLSGAQTRSVFGLFNVPAKWYAFILLVVFQILMTNVSLLGHLCGILSGFAYTYGLFNLLIPGTSFYSGIEASPWLT SCVRRPKFILCTGGNATGYIPTYSGQNTSSSGILSGNMWRNISSWMPQRETSSQSMPEQDSRFPGRARTLASAQSPITPSGNSDANLQARLLDDTASDHS SHTAESVSRQQLPDGRRSVTDNAAALGNPAPHQTPVVSDDQIQKLVSMGFEKTQVEVALAAADGDINVAVEILMSQQEDVWSIPGGGGGISRVLQDGAVF EKAGVNVSVVYGVMPPEAYRAARAASPDQKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTPAYIFDDDVKHFHS IQKQACDKFDPSFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLNDYDQEMLLSFATECANSVIPAYVPIVERRKDTPFTDQQLAWQQLRRGRYVEFNLV YDRGTTFGLKTGGRIESILVSLPLSARWEYDHKPEEGSEEWNLLDACINPREWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03475		LIN2, HEMF1, AT...	LESION INITIATION 2, Coproporp...		Lus10017221 [exp]	0	1
AT3G61440		ATCYSC1, ARATH;...	BETA-SUBSTITUTED ALA SYNTHASE ...		Lus10036370 [exp]	6.5	0.9281
AT5G39890			Protein of unknown function (D...		Lus10003861 [exp]	6.6	0.9543
AT1G03475		LIN2, HEMF1, AT...	LESION INITIATION 2, Coproporp...		Lus10021087 [exp]	7.1	0.9128
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Lus10022724 [exp]	9.3	0.8973
AT1G18500		MAML-4, IPMS1	ISOPROPYLMALATE SYNTHASE 1, me...		Lus10019574 [exp]	10.5	0.9421
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10041071 [exp]	10.6	0.9377
AT1G43580			Sphingomyelin synthetase famil...		Lus10028111 [exp]	11.7	0.8789
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10030534 [exp]	13.9	0.9414
AT3G08650			ZIP metal ion transporter fami...		Lus10035606 [exp]	14.7	0.9412
AT4G28190	ULT	ULT1	ULTRAPETALA1, Developmental re...		Lus10039791 [exp]	14.9	0.9018

Compare expression of checked genes

Lus10017221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.