Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18440 79 / 1e-16 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G25480 74 / 4e-15 Aluminium activated malate transporter family protein (.1) AT2G17470 74 / 8e-15 AtALMT6, ALMT6 ALuminium activated Malate Transporter 6, Aluminium activated malate transporter family protein (.1) AT1G18420 73 / 1e-14 Aluminium activated malate transporter family protein (.1) AT1G68600 69 / 3e-13 Aluminium activated malate transporter family protein (.1) AT5G46600 56 / 1e-08 Aluminium activated malate transporter family protein (.1) AT4G17970 54 / 3e-08 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46610 54 / 4e-08 Aluminium activated malate transporter family protein (.1.2.3) AT1G08430 51 / 2e-07 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT1G08440 46 / 2e-05 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024711 [exp] 284 / 3e-97 AT3G18440 76 / 9e-16 aluminum-activated malate transporter 9 (.1) Lus10024710 [exp] 255 / 2e-83 AT3G18440 296 / 1e-94 aluminum-activated malate transporter 9 (.1) Lus10032328 [exp] 84 / 4e-19 AT3G18440 102 / 1e-24 aluminum-activated malate transporter 9 (.1) Lus10034301 [exp] 83 / 4e-18 AT3G18440 555 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10027657 [exp] 79 / 1e-16 AT3G18440 711 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10021694 [exp] 71 / 1e-13 AT1G25480 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10000898 [exp] 67 / 1e-12 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10004556 [exp] 64 / 2e-11 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10035037 [exp] 63 / 4e-11 AT1G25480 295 / 3e-94 Aluminium activated malate transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G097300 [exp] 221 / 7e-69 AT3G18440 307 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.003G134100 [exp] 209 / 8e-65 AT3G18440 306 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.010G127400 [exp] 81 / 2e-17 AT3G18440 588 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.008G118600 [exp] 77 / 6e-16 AT1G25480 646 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.015G053400 [exp] 73 / 1e-14 AT3G18440 681 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.001G144300 [exp] 72 / 3e-14 AT4G17970 634 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.002G054300 [exp] 59 / 5e-10 AT5G46600 252 / 3e-78 Aluminium activated malate transporter family protein (.1) Potri.002G174600 [exp] 52 / 2e-07 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.006G203100 [exp] 51 / 3e-07 AT3G11680 470 / 4e-163 Aluminium activated malate transporter family protein (.1) Potri.003G145000 [exp] 51 / 3e-07 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10017222 pacid=23165761 polypeptide=Lus10017222 locus=Lus10017222.g ID=Lus10017222.BGIv1.0 annot-version=v1.0 ATGGTAAATGTGATATCGAGGAAAACGACTAAGAAGAAATCTTATTCACTCGAAGAATGTGTTGAGAAGTATTTGGAAGACGAGGGACTAGAGCATCCCG AGTTCACCAGCACAGTGATGGATGAGTTCCTGGATGAGCCTGCGTATAAGAAATGCCAAACCATCCTCAATTCGTCTGTGAAACTCGAATCCTTGAGGTT TAGACAATTCTTCTATCCATGGTCAGAGTACGTTAAAGTTGGTGCTGTACTAAGATATTGTGCTTATGAAGTCATGGTACTTCATGGTGTTTTTCATTCT GGGATTCAGGCGCCATATAATCTGAGAGTTGCATTCAAGCCCGAAATTCGTGAAGCAGTCACTCGATCCGCAGAGCTAATCCGAAACATGGGAGACGAGA TCAACAACATGAAGAGAAACCTCAAAGCTTCGGTGCTAAACATGGTCACAGTTCGGCTGAGCGGCTCCAACGCACCATCGACTTGCACTCTTACTTATGG TGAGGAAGTAGTCGAGAAGGATGCACTCGGTCTCGAGGACGAGGATGATTTTGTAATGCAAAGAGTTGGCTACGGTACGGAATTCCTGCCACGGATGAGG ACTCTAGAGAGCACGGCTACACTTTCGCTGGCAACTTTTACGTCTTTGTTAATTGAGTTTGTTGCTAGGCTTGATCACTTGGTTGAAGCTGTTAATGAAC TCTGCAGCATGGCCAGTTTCAAGCCTGAGGACCTTGTGTAG
AA sequence Show only first row Show all	>Lus10017222 pacid=23165761 polypeptide=Lus10017222 locus=Lus10017222.g ID=Lus10017222.BGIv1.0 annot-version=v1.0 MVNVISRKTTKKKSYSLEECVEKYLEDEGLEHPEFTSTVMDEFLDEPAYKKCQTILNSSVKLESLRFRQFFYPWSEYVKVGAVLRYCAYEVMVLHGVFHS GIQAPYNLRVAFKPEIREAVTRSAELIRNMGDEINNMKRNLKASVLNMVTVRLSGSNAPSTCTLTYGEEVVEKDALGLEDEDDFVMQRVGYGTEFLPRMR TLESTATLSLATFTSLLIEFVARLDHLVEAVNELCSMASFKPEDLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10017222 [exp]	0	1

Compare expression of checked genes

Lus10017222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.