Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54720 575 / 0 MFO1, HPT, COP2, AMP1 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1) AT5G19740 432 / 2e-144 Peptidase M28 family protein (.1) AT4G07670 161 / 7e-46 protease-associated (PA) domain-containing protein (.1), protease-associated (PA) domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021090 [exp] 927 / 0 AT3G54720 628 / 0.0 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1) Lus10011133 [exp] 370 / 9e-121 AT5G19740 806 / 0.0 Peptidase M28 family protein (.1) Lus10043036 [exp] 346 / 1e-111 AT5G19740 745 / 0.0 Peptidase M28 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G064300 [exp] 645 / 0 AT3G54720 803 / 0.0 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1) Potri.006G153300 [exp] 458 / 4e-154 AT5G19740 877 / 0.0 Peptidase M28 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04253 [flax] [poplar] TFR_dimer Transferrin receptor-like dimerisation domain CL0035 [flax] [poplar] Peptidase_MH PF04389 [flax] [poplar] Peptidase_M28 Peptidase family M28
Representative CDS sequence Show only first row Show all	>Lus10017223 pacid=23165865 polypeptide=Lus10017223 locus=Lus10017223.g ID=Lus10017223.BGIv1.0 annot-version=v1.0 ATGCCTTACCACGCCTACTCCCCCTCGGGCGGAGCCGTCGCGGAGCCCGTGTACGTCAACCACGGCAGCGAGGAGGACTACCGTGCGCTGGACGCGCTCG GGGTCAGCGTCAAGGGGCGCGTGGTGTTGGTTAGAAAGGGCGGCGGCGAGTTGAGCAGAGGGGCGACGGTTCGGATTGCGGCGGGACAAGGTGCGGCGGC AGCAGTTCTGTTCGGCGGCGGTAGTGGGGTTGAAAGAGGAACCGTAATAAATGGGATGGGGGACCCACTGAGTCCCGGTTGGGCGGCGGTTGAAGGAGGT GAGAGGTTGGAGGAAAAGCAAGTGTCGGGAGAAAAGTTCCCACTGATTCCGTCGACTCAGGTGACTAACGTCATCTTGGGTTCCCACGGGGGTCCAGCGG TTCCGACCGAGTGGGGAATCGGTACCCCTGGTCAGCGGGTCGGTCCTGGTCCGACCTTGGTCAACTTGACTTTTCTGGGAGAGAAGAAGGAGGCTAGAAT ACAGAATGTGTTTGCAGTGATAAGAGGGTTTGAAGAGCCAGACCGTTACGTGATCATGGGGAACCACAGGGATGCGTGGACGTACGGAGCAGTCGATCCA AACAGCGGGACTGCTGCGTTGCTCGACATTGCTCGACGATTCTCGAACATGCTGCGAAATGGATGGAGGCCTCGACGAACCATCTTGCTTTCCAGCTGGG ACGGGGAAGAGTTCGGGATGGTAGGGTCCACGGAATGGGTTGAACAGAATCTGGTGAATTTGAGAGGGAAAGCAGTGGCCTATCTGAATGTTGACTGTGC TGTTCAAGGTGCGGGTTTCAATGCTGCTTCGACTCCTCAGCTCGATAATCTTCTTTTCGAGGTTACGCGGAAGGTGAAGGATCCTGATGTTGTAGGTGCT ATGTTGTATGATAAGTGGGCATCCATGAACCAAGCTACTAGTATCGAAAGGCTTAGTGGAGCGTTCTCTGATTTCGCTCCGTTTCTGCAACACGGAGGGA TTCCTTCAGCTGATATATATTATGGAAAAGCAGACTTTCCAGTCTATCACACTGCGTTCGACTCGTATGATTGGGTGGTAAAGCATGCTGATCCCCTCTT TCATCGTCATGTTGCTGTTGCTGATGTTTGGGGACTTGTAGCACTCCGTTTGGCTGATGATCCCATCCTTCCTTTCAACTATCTCTCTTATGCACAACAG TTATCTAAGTACAAAGAGGAATTGAGCATTTTAGTGGACAAGAGAATTTCTCTTCACCCTTTAGTTTCTGCCATTGAACAGCTTGCCTCTGCTGCTGAAG AAGCTGAAATTGAGGCCAAGGTTCTTCGGAAACAAGATGGTAGCGATGGCTTGACAGCATTGAAGCAACGTGCGTTCAACGACAGGCTGATGCTCGCAGA ACGAGGATTCCTCGATGCAGATGGACTTCAAGGGAGACATTGGTTTAAGCATCTGATTTACGGACCTCACGGAGACTATCAGAGTAAACTGGATTTCTTC CCAGGTATAGCAGATGCAATCCACAAAAATCCGAGCCAGCCGCGGCAGGAAGGTGCTGTTCAGCACGAAGTGTGGCGAGTTTCCAGAGCTATTCAAGGAG CTGCTAATGCTCTCAGAGGCCAGATCCTCCCATGA
AA sequence Show only first row Show all	>Lus10017223 pacid=23165865 polypeptide=Lus10017223 locus=Lus10017223.g ID=Lus10017223.BGIv1.0 annot-version=v1.0 MPYHAYSPSGGAVAEPVYVNHGSEEDYRALDALGVSVKGRVVLVRKGGGELSRGATVRIAAGQGAAAAVLFGGGSGVERGTVINGMGDPLSPGWAAVEGG ERLEEKQVSGEKFPLIPSTQVTNVILGSHGGPAVPTEWGIGTPGQRVGPGPTLVNLTFLGEKKEARIQNVFAVIRGFEEPDRYVIMGNHRDAWTYGAVDP NSGTAALLDIARRFSNMLRNGWRPRRTILLSSWDGEEFGMVGSTEWVEQNLVNLRGKAVAYLNVDCAVQGAGFNAASTPQLDNLLFEVTRKVKDPDVVGA MLYDKWASMNQATSIERLSGAFSDFAPFLQHGGIPSADIYYGKADFPVYHTAFDSYDWVVKHADPLFHRHVAVADVWGLVALRLADDPILPFNYLSYAQQ LSKYKEELSILVDKRISLHPLVSAIEQLASAAEEAEIEAKVLRKQDGSDGLTALKQRAFNDRLMLAERGFLDADGLQGRHWFKHLIYGPHGDYQSKLDFF PGIADAIHKNPSQPRQEGAVQHEVWRVSRAIQGAANALRGQILP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54720		MFO1, HPT, COP2...	PRIMORDIA TIMING, Multifolia, ...		Lus10017223 [exp]	0	1
AT5G65880			unknown protein		Lus10011719 [exp]	8.3	0.8466
AT2G28780			unknown protein		Lus10007010 [exp]	8.9	0.8584
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10011697 [exp]	10.0	0.8414
AT2G22560			Kinase interacting (KIP1-like)...		Lus10002655 [exp]	19.3	0.8329
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	21.1	0.8530
AT3G17180		SCPL33	serine carboxypeptidase-like 3...		Lus10037810 [exp]	22.2	0.8198
AT3G07440			unknown protein		Lus10009585 [exp]	30.6	0.8265
AT3G44010			Ribosomal protein S14p/S29e fa...		Lus10039155 [exp]	32.6	0.7964
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Lus10024295 [exp]	33.1	0.8272
AT4G27300			S-locus lectin protein kinase ...		Lus10014000 [exp]	44.1	0.7589

Compare expression of checked genes

Lus10017223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.