Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49450 43 / 0.0003 F-box and associated interaction domains-containing protein (.1) AT5G49610 42 / 0.0006 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007302 [exp] 138 / 2e-36 AT1G15680 49 / 4e-06 F-box family protein (.1) Lus10013987 [exp] 130 / 7e-33 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10003349 [exp] 128 / 3e-32 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10040838 [exp] 119 / 3e-29 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10013986 [exp] 117 / 2e-28 ND 55 / 7e-08 Lus10035796 [exp] 104 / 2e-24 ND 45 / 1e-04 Lus10000664 [exp] 96 / 1e-21 AT3G23570 166 / 1e-48 alpha/beta-Hydrolases superfamily protein (.1) Lus10007303 [exp] 93 / 7e-21 AT3G23950 45 / 6e-05 F-box family protein (.1) Lus10000667 [exp] 92 / 7e-21 ND 51 / 4e-07
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G000700 [exp] 88 / 7e-19 AT3G15910 58 / 5e-09 unknown protein Potri.011G004800 [exp] 78 / 2e-15 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.009G132400 [exp] 71 / 4e-13 ND / Potri.013G067800 [exp] 51 / 7e-07 AT5G07610 131 / 4e-34 F-box family protein (.1) Potri.005G043500 [exp] 42 / 0.0005 AT5G07610 135 / 7e-36 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017226 pacid=23165755 polypeptide=Lus10017226 locus=Lus10017226.g ID=Lus10017226.BGIv1.0 annot-version=v1.0 ATGGCGACCAGCCTCTCCATCTTGTTTTCCGATCTCCGGTTACCGAGAACAGAAGAACAAACATCGGAAGAGGAACTCCTCCTCCCTCCTCCGATCAGCA AACTAGACGGCCAATACGATCTCCTTCTCGAAATCCTGACCCGCGCCCTCACCGACCCTGGATCGGCTGCCCGATCCAAATCCGTCTGCAAGAATTGGAA CTCCCTCCTCTCAAATCCCTGCTTCTTCCCCCGCTTCATCCAACACAAACAGCAACGACACGTAGTCGACGAAACTCTACTGAAGGAATCAATCCTGAGC TTCCTCCCCCAAATGTCTGCCGAAGCGAGGGCCAAGTTCCGGATTCTGGACCGGGCCAAGGACTTGACACTGTGCGGCTGTCACCGCCAATCATTCTTCT TCTTGTTCGTCTGCAATCATTACACCAAGCAATTGGTTGCCATTCCTCCTCCGGTACACCGGCAAGCTGAATCGAGAGATCCGCACCACTGCTTTCTAGC CTGCAATCCGCGCAGCGAGCATCAATTCAGGGTGTTGCTCGTACGCCCGAGAGACAGGACATTGCATTATTTCTGCTCCGAGTCGAAGAATTGGACGGAT TCTGAAATCCATGGTCCTTACTCCTTCAAGGAGATGACTGTGTGGAATGGGAAGCTGTATTGGCTGAACTCCCAGCCGGAGAGAGTTGTTGAGTACAATC CTTACGGAAACTGCGAGTCGTCTCGGCCGCTAGGTGCAGTTATGTTCGATGCAGAAGCGGCGATCTTATATGATAAGAGAAAGGCATTTCCGTCGTCCGT TTTGAGGGTCTCTGGAGGCGATTTGCACGTTGTACGCTTGCGGGACAGTGGATCGTTGAGTGTTTGGAGGCTGGACGACGATTCGAAACAGTGGAGGATG TTGTATGAAGTGTATACTGACAGACTGACATGGTGTGAGGAGGAGAAGGATGAGGGGTTGGTGTTGGATTCTGTAATTGGTCAGCATCCGGAGAATCCTG AGGTTGTTTTCCTGCAGTTTTTTGGTTGTTCTATTGACGATAGTACGGTAGTGGCGTGCAATTTGCGGACGAGAACACTACAACGGGTGGAGAACGGATT GCCGCGGCCAAAATCCTCTTGGGCTACGGTGGTTCATAACTACAATAAATTACAATGA
AA sequence Show only first row Show all	>Lus10017226 pacid=23165755 polypeptide=Lus10017226 locus=Lus10017226.g ID=Lus10017226.BGIv1.0 annot-version=v1.0 MATSLSILFSDLRLPRTEEQTSEEELLLPPPISKLDGQYDLLLEILTRALTDPGSAARSKSVCKNWNSLLSNPCFFPRFIQHKQQRHVVDETLLKESILS FLPQMSAEARAKFRILDRAKDLTLCGCHRQSFFFLFVCNHYTKQLVAIPPPVHRQAESRDPHHCFLACNPRSEHQFRVLLVRPRDRTLHYFCSESKNWTD SEIHGPYSFKEMTVWNGKLYWLNSQPERVVEYNPYGNCESSRPLGAVMFDAEAAILYDKRKAFPSSVLRVSGGDLHVVRLRDSGSLSVWRLDDDSKQWRM LYEVYTDRLTWCEEEKDEGLVLDSVIGQHPENPEVVFLQFFGCSIDDSTVVACNLRTRTLQRVENGLPRPKSSWATVVHNYNKLQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017226 [exp]	0	1
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	6.9	0.9550
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	7.6	0.9539
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	9.6	0.9538
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021435 [exp]	14.8	0.9506
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	15.9	0.9470
AT5G60330			unknown protein		Lus10018274 [exp]	16.3	0.9505
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10016284 [exp]	18.2	0.9492
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008935 [exp]	20.0	0.9421
AT1G68470			Exostosin family protein (.1)		Lus10005567 [exp]	20.7	0.9340
					Lus10032468 [exp]	21.4	0.9361

Compare expression of checked genes

Lus10017226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.