Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12010 771 / 0 unknown protein AT3G12012 81 / 1e-18 CPuORF20 conserved peptide upstream open reading frame 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021085 [exp] 1302 / 0 AT3G12010 722 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G060500 [exp] 935 / 0 AT3G12010 806 / 0.0 unknown protein Potri.006G195000 [exp] 919 / 0 AT3G12010 811 / 0.0 unknown protein Potri.016G060550 [exp] 109 / 1e-28 AT3G12012 92 / 5e-27 conserved peptide upstream open reading frame 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07035 [flax] [poplar] Mic1 Colon cancer-associated protein Mic1-like
Representative CDS sequence Show only first row Show all	>Lus10017227 pacid=23165792 polypeptide=Lus10017227 locus=Lus10017227.g ID=Lus10017227.BGIv1.0 annot-version=v1.0 ATGAAAGAAAGGAACACTACTTCCACGCTCAAAAACATATTGGTCAAGTGTGCTGCTCAGGCAAAAGAGTACGGAGGCTGTGTTGCGAAAAAGGTTCCTG AAGTTGAGCGTGATATGTGTCTCAAAGAATTTCTGGCCTTGAAGAATTGCATGCAGAACACGGTATCGTATTTTGCATCTTCACTTATTTCACAGCTTAA TGTTGGGTCAAGTGGCTCTGGTGGATTGTCGCATGTGTACTCTCAGTATCCACCTTTACGATGTAGTGTGCCTGGGTCAAGGGGTTTATATTATGATGAT GCAAATAAACTGCTACTCTCTCCAACATCTGACCAGGTCTTCTCATGGAAAACAGTTCCCTTTTCTCCCGATGCTACTGCTACTGCTGATTCCATTAGCG AAGGACCCATCTTATCTATTCGATATTCGTTGGATGCGAAATCCATAGCAGTCCAGCGTTCTAATGAAGAAATTCAGTTTGTTCACCGAGAAACAAGAGA AACATTTACTCACACATGCAAACCAGACTCTGAGAGCATACTTGGACTTTTTTGGACAGATTGCCCACTTTGTGATTTGGTGCTTGTGAAGACTAGTGGG CTGGATTTGCTTACGATCAACTTTACTTCAAAATCACTTACCTTGGTAGAAACAAAGAAGTTGAATGTGAGCTGGTATGTTTATACACATGAGAGTCGCT TGGTTCTTCTTGCTTCAGGAATGCAATGCAAGTCACTTACTGGGTTCCAGCTTTCGTCAGTTGGAATTGTACGTTTGCCAAGGTTTGAGATGGTAATGGC CAAATCTGACGCCAACAATAAGCCTATCCTTGCTGCTGAAGATGTTTTTATTGTCACTGTCTACGGAAGGATATATTGCTTGCAAATTGATAGAGTTGCA ATGCAGCTCCACTTATATAGGTTTTATCGCGATGCTGTTGTGCAACAGGGTTCACTGCCAATGTTTTCTAGCAAAATTGCTGTTAGCGTGGTTGACAATG TTCTACTTGTTCATCAAGTAGATGCTAGAGTTACTATACTCTATGACATATTTGCAGATTCACGAGCCCCTATAACTGCCCCTCTCCCTCTATTGCTTAG AGGTTTGCCTAGATCCAAATCTAGTCGGTCTATTACTGCGAGTGACAATTTAGGTCGAAACTCAAGTGATCAGGAATCAATTATTTATGGAGATGACTGG AAATTTCTGGTGCCTGACCTAATATGTGATGTTGCAAGCAAGCTGTTGTGGAAGATCCATCTAGACTTAGAGGTCATCTCTGCGAGTAGCTCCGAGGTTC CGTCAATTCTGGAATTCTTGCAGAGAAGGAAGCAGGAAGCAAGTAAGACTAAACAGCTATGTTTGGCAATAACACGCACCATTATCTTGGAAAGGCGGCC AGTACCCATGGTTGCAAAAGCAATAGACATCTTGGTCTCGTCTTACTCGCACTCATTGAAGACAGGTATTGATCTGAAACCATCAAAACCCGGCGAACCC TCAGCTTCTGCCAGTAACTCAAGTGGATCAGCCAACAACGCATCAAGGGGCGGAGACAGTGACAAATCTTCCAATCGTTCAGCTTCAGATCCGGACAATT CTGCATGGAATATATCTCAAGAAGCAGACTCCAGAGATCTCCAGGAAGTAGAAGAGAACTCAGTAGGTGCTGAAAGCTCCAGGACTCGACAAAATAATGA TCAATTGAATGCTGATAATTCTGAGAGGCAGGATTCCCAACTTACTTCGCCGGCAATCTCGCCTGATGAGATGTATAATTGTGTGTTTGCTCCGGTTGAT GAAGCTATGGATGGAGATTTTTCATACTTAGTTGCGATAGTAGTCGAGTTCCTTCGAAGCACAAATTCAGAAAAGATTAAACTTCATCCAAACATCTACG TGCTGACGATACAACTTCTAGCACGGAACGGCCGGTTTGCTGAGCTGTCTCAGTTTATCATAAACAAGGTTCTTGAACCCTCGAAGGAAGTCGCAATGCA GCTTTTGGAATCAGGTCGTCAGAATTCACAAATAAAGAAGCTGGCTCTAGACATACTGCGACAGCTCTATTCGCACCATGACTACGTGGTGTTACTAGTT CGGGACGGGTGTTATCTTGAAGCGTTGCGTTATGCAAGGAAGAATCAGGTGACTAGCGTCCCTCCTTCGCTCTTTCTCGAAGCGGCATTGGCTAGTAAGG ACTCACAACATCTAGCTGCAGTCCTGAGGTTCTTTTCGGACTTCATCCCTGGGTTCCGAAACACTTCAGACCACCAAACCTACTTCCGTATCCTCAACGA GATGAATACAGCTGTAGCTGTTTGA
AA sequence Show only first row Show all	>Lus10017227 pacid=23165792 polypeptide=Lus10017227 locus=Lus10017227.g ID=Lus10017227.BGIv1.0 annot-version=v1.0 MKERNTTSTLKNILVKCAAQAKEYGGCVAKKVPEVERDMCLKEFLALKNCMQNTVSYFASSLISQLNVGSSGSGGLSHVYSQYPPLRCSVPGSRGLYYDD ANKLLLSPTSDQVFSWKTVPFSPDATATADSISEGPILSIRYSLDAKSIAVQRSNEEIQFVHRETRETFTHTCKPDSESILGLFWTDCPLCDLVLVKTSG LDLLTINFTSKSLTLVETKKLNVSWYVYTHESRLVLLASGMQCKSLTGFQLSSVGIVRLPRFEMVMAKSDANNKPILAAEDVFIVTVYGRIYCLQIDRVA MQLHLYRFYRDAVVQQGSLPMFSSKIAVSVVDNVLLVHQVDARVTILYDIFADSRAPITAPLPLLLRGLPRSKSSRSITASDNLGRNSSDQESIIYGDDW KFLVPDLICDVASKLLWKIHLDLEVISASSSEVPSILEFLQRRKQEASKTKQLCLAITRTIILERRPVPMVAKAIDILVSSYSHSLKTGIDLKPSKPGEP SASASNSSGSANNASRGGDSDKSSNRSASDPDNSAWNISQEADSRDLQEVEENSVGAESSRTRQNNDQLNADNSERQDSQLTSPAISPDEMYNCVFAPVD EAMDGDFSYLVAIVVEFLRSTNSEKIKLHPNIYVLTIQLLARNGRFAELSQFIINKVLEPSKEVAMQLLESGRQNSQIKKLALDILRQLYSHHDYVVLLV RDGCYLEALRYARKNQVTSVPPSLFLEAALASKDSQHLAAVLRFFSDFIPGFRNTSDHQTYFRILNEMNTAVAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12010			unknown protein		Lus10017227 [exp]	0	1
AT2G22010		RKP	related to KPC1 (.1.2)		Lus10016817 [exp]	1.7	0.8991
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Lus10024709 [exp]	2.2	0.8587
AT4G11110		SPA2	SPA1-related 2 (.1)		Lus10032358 [exp]	5.9	0.8558
AT5G52530			dentin sialophosphoprotein-rel...		Lus10038838 [exp]	7.5	0.8549
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Lus10001428 [exp]	9.8	0.8712
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039926 [exp]	10.0	0.8523
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10014166 [exp]	12.2	0.8773
AT2G16365			F-box family protein (.1.2.3.4...		Lus10023554 [exp]	14.1	0.8307
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10039457 [exp]	17.5	0.8433
AT3G09320			DHHC-type zinc finger family p...		Lus10010852 [exp]	20.5	0.8097

Compare expression of checked genes

Lus10017227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.