Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58070 110 / 5e-30 C2H2ZnF GIS GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G41940 109 / 1e-29 C2H2ZnF ZFP8 zinc finger protein 8 (.1) AT5G06650 88 / 3e-22 C2H2ZnF GIS2 GLABROUS INFLORESCENCE STEMS 2, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G67030 62 / 3e-12 C2H2ZnF ZFP6 zinc finger protein 6 (.1) AT1G24625 61 / 6e-12 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT1G68360 61 / 2e-11 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G66140 60 / 5e-11 C2H2ZnF ZFP4 zinc finger protein 4 (.1) AT1G80730 59 / 7e-11 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT5G10970 58 / 2e-10 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G14010 55 / 7e-10 C2H2ZnF KNUCKLES, KNU KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021081 [exp] 187 / 5e-60 AT3G58070 147 / 3e-43 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10016238 [exp] 124 / 8e-36 AT3G58070 118 / 1e-32 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10033567 [exp] 62 / 6e-12 AT1G67030 113 / 2e-31 zinc finger protein 6 (.1) Lus10017609 [exp] 61 / 1e-11 AT1G67030 113 / 2e-31 zinc finger protein 6 (.1) Lus10003681 [exp] 57 / 2e-10 AT1G24625 112 / 9e-31 zinc finger protein 7 (.1) Lus10014350 [exp] 57 / 5e-10 AT1G80730 110 / 1e-29 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10029204 [exp] 57 / 5e-10 AT1G68360 71 / 2e-14 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10013243 [exp] 57 / 6e-10 AT1G66140 125 / 3e-34 zinc finger protein 4 (.1) Lus10030764 [exp] 57 / 6e-10 AT1G66140 124 / 1e-33 zinc finger protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G195100 [exp] 134 / 7e-40 AT3G58070 156 / 4e-47 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.016G060600 [exp] 132 / 1e-38 AT2G41940 155 / 1e-46 zinc finger protein 8 (.1) Potri.008G123100 [exp] 64 / 2e-12 AT1G68360 123 / 4e-34 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G140700 [exp] 62 / 2e-12 AT5G14010 66 / 9e-14 KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G199200 [exp] 62 / 3e-12 AT1G67030 71 / 2e-15 zinc finger protein 6 (.1) Potri.010G122400 [exp] 61 / 1e-11 AT1G68360 149 / 2e-44 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G102700 [exp] 61 / 1e-11 AT1G66140 157 / 4e-47 zinc finger protein 4 (.1) Potri.017G116300 [exp] 61 / 1e-11 AT1G68360 99 / 6e-25 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G063800 [exp] 62 / 2e-11 AT5G01860 92 / 6e-22 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.004G084100 [exp] 61 / 2e-11 AT1G66140 164 / 6e-50 zinc finger protein 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017229 pacid=23165816 polypeptide=Lus10017229 locus=Lus10017229.g ID=Lus10017229.BGIv1.0 annot-version=v1.0 ATGGGCGCAGAAAGGGAAACCCACGACTTCCTCAACGTCGAATCTTTCTCCCAGCTCCCTTTCATCCGCCCTTCTCCTCCCCCGATCCGCCTCTTCGGCT CCGAACTCTCCATCTGCACCACCGCGGCCGCGGCCAAATCCGTGGTCGATAAAGAGTCAAGCCCTCCTGTCGCGGAAAGTTCAACAACCAACAACACTAT TAGCAACGGGAGTAGTAGTAATAACAACAGGAGGTTCGAGTGTCACTACTGCAGCAGAAACTTCCCCACGTCGCAGGCGCTGGGCGGTCACCAGAACGCG CACAAGCGGGAGCGGCAGCACGCCAAGAGGGCCCACCACCACGGATACGTAGCGGCCACCGACGCGCCTTTCTACGCGTACAGGACGACGCCGGCTGCTA TTGCTGCTGGTCACGCGCCTTTCTCTTCCTACTCGTCATGGAACGGCGGCGGATCTGCTTCGAGGTTTTACAGTGGCGGTGGCAGCGTAGGGGGGTCGTT CGATTGA
AA sequence Show only first row Show all	>Lus10017229 pacid=23165816 polypeptide=Lus10017229 locus=Lus10017229.g ID=Lus10017229.BGIv1.0 annot-version=v1.0 MGAERETHDFLNVESFSQLPFIRPSPPPIRLFGSELSICTTAAAAKSVVDKESSPPVAESSTTNNTISNGSSSNNNRRFECHYCSRNFPTSQALGGHQNA HKRERQHAKRAHHHGYVAATDAPFYAYRTTPAAIAAGHAPFSSYSSWNGGGSASRFYSGGGSVGGSFD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Lus10017229 [exp]	0	1
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10014577 [exp]	8.8	0.8945
AT3G09870			SAUR-like auxin-responsive pro...		Lus10001398 [exp]	9.2	0.8533
AT5G16030			unknown protein		Lus10033537 [exp]	9.7	0.8740
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10012884 [exp]	9.8	0.8513
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10011170 [exp]	16.1	0.8871
AT4G37510			Ribonuclease III family protei...		Lus10019289 [exp]	17.1	0.8775
AT3G51870			Mitochondrial substrate carrie...		Lus10035509 [exp]	18.5	0.8754
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10016579 [exp]	19.0	0.8688
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10039148 [exp]	23.1	0.8623
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10010273 [exp]	25.8	0.8306

Compare expression of checked genes

Lus10017229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.