Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41945 211 / 6e-70 unknown protein AT5G18250 64 / 7e-13 unknown protein AT3G04040 64 / 1e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021080 [exp] 298 / 3e-101 AT2G41945 230 / 2e-75 unknown protein Lus10029305 [exp] 228 / 2e-76 AT2G41945 202 / 2e-67 unknown protein Lus10016236 [exp] 80 / 6e-17 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10020259 [exp] 66 / 2e-13 AT5G18250 174 / 3e-57 unknown protein Lus10002635 [exp] 57 / 6e-10 AT3G04040 170 / 3e-55 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G195200 [exp] 233 / 1e-78 AT2G41945 200 / 8e-67 unknown protein Potri.001G023000 [exp] 69 / 2e-14 AT5G18250 144 / 2e-45 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017230 pacid=23165842 polypeptide=Lus10017230 locus=Lus10017230.g ID=Lus10017230.BGIv1.0 annot-version=v1.0 ATGGCCTACAAAAGAATAATATTTTGCAAACCGTATCTGGGCTCAAAGCCTGCCATTCATAACAATATGATCCGTAATCAACTTCATCATTCGGACCAAT TAGGCCCTTCCGAGTGGACAGGTCGAGCCCAAGATGGCGACACTAATCATAAGCAGACGTGGCCTCCGTTTCGCCAGCTCGCGAATTACACTGCATCTCA ATTTCCGGTCATCGAAGCAAAGCGGGAGCTGAAAGAGTCGAAGGAAACTCCGGCGCCGGAGATGGGAACTCGGGAGGTTTACGAAGAGAAGCTGCGGAAC GGGAATCTGCATCACGATCCCACTATTAACCCTGGCCTCGGATCACCTCGCTGTCCTCGCTGCCTCTCCCTCCTCGACGCCGATTCCGACAAGGCCGAAT GGACCATAACTTCTGTTTTGCACGACGCCACCGCCGTGGCTGGGTCTGGCATTGGTGCGATGCTTAGTGCAGTCCATGGTTTCAATAAAGGCATCCCGTT CCTTCAAAATCGCCTGAAGGGACCGAAGTGGCTTCCTTTTGTTGTTGGGTTTCCTCCACTGCTAATGTACTCTGGCTATGCTCTTCCAAAGTTTACTCAA CTTACAGTGACATCCTACTATGCTACATCAAGTGCCTCACATTATGGGATTTCACTGCTGACTCGAAATATTGAGGAGGGCCACATTTCAAGAGTTGAGC AAGAAAAGCGTAGATGA
AA sequence Show only first row Show all	>Lus10017230 pacid=23165842 polypeptide=Lus10017230 locus=Lus10017230.g ID=Lus10017230.BGIv1.0 annot-version=v1.0 MAYKRIIFCKPYLGSKPAIHNNMIRNQLHHSDQLGPSEWTGRAQDGDTNHKQTWPPFRQLANYTASQFPVIEAKRELKESKETPAPEMGTREVYEEKLRN GNLHHDPTINPGLGSPRCPRCLSLLDADSDKAEWTITSVLHDATAVAGSGIGAMLSAVHGFNKGIPFLQNRLKGPKWLPFVVGFPPLLMYSGYALPKFTQ LTVTSYYATSSASHYGISLLTRNIEEGHISRVEQEKRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41945			unknown protein		Lus10017230 [exp]	0	1
AT1G13790		FDM4	factor of DNA methylation 4, X...		Lus10032933 [exp]	11.0	0.7348
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10021179 [exp]	17.0	0.5963
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10020314 [exp]	28.4	0.6486
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10018060 [exp]	30.4	0.6704
AT3G18035		HON4	winged-helix DNA-binding trans...		Lus10024594 [exp]	40.4	0.6840
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10028352 [exp]	62.3	0.6452
AT5G03670			unknown protein		Lus10027723 [exp]	63.9	0.6673
AT1G32190			alpha/beta-Hydrolases superfam...		Lus10040096 [exp]	65.5	0.6671
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10029733 [exp]	70.2	0.6458
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10004398 [exp]	71.8	0.6299

Compare expression of checked genes

Lus10017230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.