Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58170 188 / 3e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G55210 180 / 4e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT5G42500 176 / 1e-56 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 175 / 5e-56 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49040 173 / 2e-55 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 168 / 2e-53 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13650 168 / 3e-53 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 160 / 2e-50 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G21100 150 / 2e-46 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13660 146 / 2e-45 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029306 [exp] 223 / 1e-74 AT1G65870 208 / 5e-69 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10042488 [exp] 196 / 6e-64 AT1G58170 202 / 1e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10026176 [exp] 190 / 7e-62 AT1G58170 207 / 1e-68 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10021084 [exp] 173 / 4e-55 AT5G42500 164 / 2e-51 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10039561 [exp] 166 / 1e-52 AT3G13650 157 / 5e-49 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10030483 [exp] 156 / 2e-48 AT1G65870 164 / 1e-51 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10016237 [exp] 153 / 3e-48 AT1G58170 149 / 6e-47 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10021083 [exp] 155 / 7e-48 AT1G22900 150 / 5e-46 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034479 [exp] 150 / 2e-46 AT2G21100 189 / 9e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G195300 [exp] 239 / 2e-81 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060900 [exp] 232 / 3e-78 AT1G58170 197 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060700 [exp] 228 / 9e-77 AT1G65870 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G061000 [exp] 223 / 7e-75 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G009100 [exp] 206 / 2e-68 AT1G58170 238 / 1e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216200 [exp] 206 / 5e-68 AT1G55210 239 / 2e-81 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.003G216400 [exp] 200 / 1e-65 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216300 [exp] 194 / 2e-63 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.016G060801 [exp] 186 / 2e-60 AT1G58170 164 / 5e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.009G131000 [exp] 177 / 5e-57 AT2G21100 236 / 4e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10017231 pacid=23165839 polypeptide=Lus10017231 locus=Lus10017231.g ID=Lus10017231.BGIv1.0 annot-version=v1.0 ATGGCCATCAAAGCCTTCCACGTCATCCTCCTCACCCTCCTCCTCCTCACAATCTCCCTAAACCCAAGTTTTTCCAAGATCATAAACCCTAAATTCGAAA AACTCAGCCACCTCAAGTTCTACTTTCACGACATCGTCAGCGGGCCCAACCCGACTGCAGTCCCCGTGGTGGCGGCTCGGTCCGACTCGACCAATGCCAC CAGCTCAGCATTCGGACTGGTGGTCATGATGGACAACCCTCTGACCGTGGGGCCCAACATGAGCTCCAAGATGGTGGGCCGGGCCCAGGGGATCTACGCA GCTGCGTCGCGGAGCGAGCTTAGCTTTCTGATGGTGTTCAACTTTGCGTTTGGCGAAGGGAAGTACAACGGCAGCAATCTAAGCGTTTTGGGGAGGAACA CCCCGTTTTCCGGCGTGAGGGAGATGCCGGTGGTCGGAGGGAGCGGGGTGTTCAAGTTTGCTAGAGGGTATGCTCAGGCGAAGACTCAACAGGTTGATTT GCTGACCGGAGATGCTGTGGTTGAGTACAATGTCTATGTTTTCCATTACTGA
AA sequence Show only first row Show all	>Lus10017231 pacid=23165839 polypeptide=Lus10017231 locus=Lus10017231.g ID=Lus10017231.BGIv1.0 annot-version=v1.0 MAIKAFHVILLTLLLLTISLNPSFSKIINPKFEKLSHLKFYFHDIVSGPNPTAVPVVAARSDSTNATSSAFGLVVMMDNPLTVGPNMSSKMVGRAQGIYA AASRSELSFLMVFNFAFGEGKYNGSNLSVLGRNTPFSGVREMPVVGGSGVFKFARGYAQAKTQQVDLLTGDAVVEYNVYVFHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58170			Disease resistance-responsive ...		Lus10017231 [exp]	0	1
AT2G36780			UDP-Glycosyltransferase superf...		Lus10027739 [exp]	1.4	0.9421
AT4G22060			F-box family protein with a do...		Lus10029350 [exp]	3.6	0.8755
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Lus10035186 [exp]	3.9	0.8990
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10032406 [exp]	5.3	0.9043
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10042907 [exp]	5.5	0.8838
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10011830 [exp]	6.6	0.9401
AT3G18150			RNI-like superfamily protein (...		Lus10042331 [exp]	12.9	0.8323
AT4G12545			Bifunctional inhibitor/lipid-t...		Lus10024624 [exp]	13.2	0.8894
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Lus10024020 [exp]	13.3	0.8058
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013333 [exp]	15.0	0.8647

Compare expression of checked genes

Lus10017231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.