Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09690 280 / 4e-98 Translation protein SH3-like family protein (.1) AT1G09590 280 / 4e-98 Translation protein SH3-like family protein (.1) AT1G57860 275 / 4e-96 Translation protein SH3-like family protein (.1) AT1G57660 275 / 4e-96 Translation protein SH3-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021079 [exp] 318 / 3e-113 AT1G09590 292 / 6e-103 Translation protein SH3-like family protein (.1) Lus10016241 [exp] 303 / 3e-107 AT1G09590 295 / 4e-104 Translation protein SH3-like family protein (.1) Lus10030882 [exp] 300 / 4e-106 AT1G09690 296 / 2e-104 Translation protein SH3-like family protein (.1) Lus10029302 [exp] 300 / 4e-106 AT1G09690 294 / 1e-103 Translation protein SH3-like family protein (.1) Lus10030607 [exp] 298 / 2e-105 AT1G09590 295 / 4e-104 Translation protein SH3-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G195400 [exp] 289 / 1e-101 AT1G57860 305 / 5e-108 Translation protein SH3-like family protein (.1) Potri.016G061100 [exp] 287 / 7e-101 AT1G57860 305 / 7e-108 Translation protein SH3-like family protein (.1) Potri.003G159500 [exp] 284 / 9e-100 AT1G09690 305 / 4e-108 Translation protein SH3-like family protein (.1) Potri.001G071100 [exp] 282 / 5e-99 AT1G09690 307 / 7e-109 Translation protein SH3-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [flax] [poplar] KOW PF01157 [flax] [poplar] Ribosomal_L21e Ribosomal protein L21e
Representative CDS sequence Show only first row Show all	>Lus10017232 pacid=23165804 polypeptide=Lus10017232 locus=Lus10017232.g ID=Lus10017232.BGIv1.0 annot-version=v1.0 ATGCCGGCGGGTCACGGTCTTCGTTCTCGAACTCGAGATCTTTTCCAGAGAGGCTTCAGGAAGCGTGGTTACATTCCGTTGACGACTTACCTCCGTTCAT ACAAGGTCGGTGACTACGTCGACGTCAAGGTCAATGGCGCCATTCACAAAGGTATGCCGCACAAGTTCTACCATGGACGCACCGGCCGCGTCTGGAACGT CACCAAGCGCGCCATCGGCGTCGAGATGAACAAGCAGGTGAGGGGCAAGATCCTGAGGAAAAGGATCCACGTTAGGATTGAGCACGTCATCCCGTCAAGG TGCACAGAGGAATTCCGTCTCAGGAAGAAGAAGAATGACGAACTGAAGGCCGCAGCAAAGGCCAAAGGTGAGAAGATCAGCACCAAGAGACAGCCTCAGG GCCCTAAACCTGGTTTCATGGTGGGGGGTGCAACTCTTGAAACTGTTACACCTATTCCGTACGACGTCACCAACGATCTCAAGGGTGGATATTAG
AA sequence Show only first row Show all	>Lus10017232 pacid=23165804 polypeptide=Lus10017232 locus=Lus10017232.g ID=Lus10017232.BGIv1.0 annot-version=v1.0 MPAGHGLRSRTRDLFQRGFRKRGYIPLTTYLRSYKVGDYVDVKVNGAIHKGMPHKFYHGRTGRVWNVTKRAIGVEMNKQVRGKILRKRIHVRIEHVIPSR CTEEFRLRKKKNDELKAAAKAKGEKISTKRQPQGPKPGFMVGGATLETVTPIPYDVTNDLKGGY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09590			Translation protein SH3-like f...		Lus10017232 [exp]	0	1
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10015198 [exp]	4.1	0.9652
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	5.8	0.9623
AT1G09690			Translation protein SH3-like f...		Lus10029302 [exp]	7.5	0.9528
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10021646 [exp]	8.2	0.9509
AT2G14860			Peroxisomal membrane 22 kDa (M...		Lus10002118 [exp]	8.5	0.9430
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10033607 [exp]	8.7	0.9595
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10034549 [exp]	8.9	0.9500
AT5G44500			Small nuclear ribonucleoprotei...		Lus10013108 [exp]	9.2	0.9585
AT1G74050			Ribosomal protein L6 family pr...		Lus10039083 [exp]	10.4	0.9614
AT3G53740			Ribosomal protein L36e family ...		Lus10024402 [exp]	12.0	0.9584

Compare expression of checked genes

Lus10017232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.