Plant FIBer expression Database

Lus10017233 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G48905 42 / 1e-06 LCR12 low-molecular-weight cysteine-rich 12 (.1)
AT2G22121 39 / 2e-05 LCR35 low-molecular-weight cysteine-rich 35 (.1)
AT4G29273 37 / 8e-05 LCR23 low-molecular-weight cysteine-rich 23 (.1)
AT4G29280 35 / 0.0006 LCR22 low-molecular-weight cysteine-rich 22 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021078
[exp]
165 / 3e-55 AT5G48905 43 / 6e-07 low-molecular-weight cysteine-rich 12 (.1)
Lus10015984
[exp]
38 / 6e-05 AT4G29280 47 / 1e-08 low-molecular-weight cysteine-rich 22 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G401800
[exp]
43 / 8e-07 AT4G09153 43 / 5e-07 low-molecular-weight cysteine-rich 36 (.1)
Potri.006G195532
[exp]
42 / 3e-06 AT4G29280 46 / 5e-08 low-molecular-weight cysteine-rich 22 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0054 Knottin_1 PF07333 SLR1-BP S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP)
Representative CDS sequence
>Lus10017233 pacid=23165808 polypeptide=Lus10017233 locus=Lus10017233.g ID=Lus10017233.BGIv1.0 annot-version=v1.0
ATGGCGAAGCATCAGCAATCAGTCCTCTTCATTCTCCTCCTCGTCTCAGTTGGAGTGATGGTAATGGCACCAAAGGCTGCAGAAGCGACGATAGGAGCAT
GTTCCATCGAGCTGAACCCGAACGGTTGCGCAATGCCAGGATGCCAGGAACGGTGCTTCCTCGACCACGGTGGTTGGGGACACTGCGCTCACGATACCGC
CACTGGTATCTTCCATTGCGTCTGCTTCTACTCTTGTCCTCGCCCCTGA
AA sequence
>Lus10017233 pacid=23165808 polypeptide=Lus10017233 locus=Lus10017233.g ID=Lus10017233.BGIv1.0 annot-version=v1.0
MAKHQQSVLFILLLVSVGVMVMAPKAAEATIGACSIELNPNGCAMPGCQERCFLDHGGWGHCAHDTATGIFHCVCFYSCPRP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G48905 LCR12 low-molecular-weight cysteine-... Lus10017233
[exp]
0 1
AT3G19184 B3 AP2/B3-like transcriptional fa... Lus10019871
[exp]
2.0 0.9069
AT3G19184 B3 AP2/B3-like transcriptional fa... Lus10014043
[exp]
5.2 0.8889
AT3G03990 alpha/beta-Hydrolases superfam... Lus10017296
[exp]
7.5 0.8482
AT1G23000 Heavy metal transport/detoxifi... Lus10028529
[exp]
7.7 0.8468
AT3G15790 MBD11, ATMBD11 methyl-CPG-binding domain 11 (... Lus10002168
[exp]
9.2 0.8716
AT5G01840 OFP AtOFP1 ARABIDOPSIS THALIANA OVATE FAM... Lus10042224
[exp]
10.4 0.8522
Lus10011220
[exp]
11.4 0.8934
Lus10018463
[exp]
12.2 0.8724
AT2G27550 ATC centroradialis (.1) Lus10004884
[exp]
14.1 0.8304
AT1G23000 Heavy metal transport/detoxifi... Lus10032445
[exp]
15.7 0.8863

Lus10017233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.