Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17570 389 / 3e-136 TatD related DNase (.1) AT3G03500 327 / 7e-113 TatD related DNase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021077 [exp] 545 / 0 AT5G17570 447 / 3e-159 TatD related DNase (.1) Lus10013590 [exp] 60 / 3e-10 AT3G52390 524 / 0.0 TatD related DNase (.1.2) Lus10021262 [exp] 59 / 6e-10 AT3G52390 521 / 0.0 TatD related DNase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073800 [exp] 412 / 4e-146 AT5G17570 456 / 5e-163 TatD related DNase (.1) Potri.016G068400 [exp] 42 / 0.0004 AT3G52390 566 / 0.0 TatD related DNase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF01026 [flax] [poplar] TatD_DNase TatD related DNase
Representative CDS sequence Show only first row Show all	>Lus10017234 pacid=23165750 polypeptide=Lus10017234 locus=Lus10017234.g ID=Lus10017234.BGIv1.0 annot-version=v1.0 ATGGCGAAGACCGTCAAACTATTTGATGCTCACTGCCACCTCCAAGATCCCAGAGTCCTTAACAAAGCTCCTCAACTCATAGCTGCTGCACTGGACACTG GTGTTGCCCGCTTCGCAGTGAATGGAGTTTCCGAGAAAGATTGGAGCTTGGTGAAAGATATGGGGGAGCAGTACCCTTCTGTTGTCCCTTGCTTTGGTCT CCATCCTTGGTTTATTCGGGAGAGAACTCCTAATTGGTTCGATACATTGCAAGAGTTTTTTGAAGCCACTCCCACTGCTGCAGTTGGAGAGATTAGTTTA GACAAGGGTTCACATGGAAAGACAATCGATTTTGCTGATCAGGTTGAAGTATTAAAGAAACAATTTCAACTTGCCAAGGAACTGAACAAACCAGCATCAG TTCATTGTGTTCGTGCTTTTGGTGATCTTCTTGAGGTAATGAAAAGCATGGGGCCTTTTCCTGCTGGTGTCATCCTTCATTCTTACTTGGGCTCAGCCGA GATGGTTCCGGAACTTGCAAAGCTTGGTGCTTACTTCTCAGTTTCTGGTTTCCTCATGTCCATGAAAAGACAAGGCAAAGAAGATGCTGACAGCGATGCA ACGGATGCAACGCCATCTTTAAATATGGATAATCTATATTTGGTTGATAGTAATGATTCCAGATCCGAAGCAACTCATGCCCGTGAACAAAATTCTTCAA CCTCCTGTGAGAATCCACAAGCTTCGAAAGATGCATCAAGCCCCCTCCCAAAGGAAACACTTAACCATCCTGCCAACATTCATCACGTACTCGATCACGT GCCGTCTTTGTTAGAGTTGAGTAAAGAAGAAGTCGCCGAAGGAAGTTACAGAAATGCAGTACGCGTGTTCACATACGAAGGCTCGAAGTTGCAGTTAGAA TTATAA
AA sequence Show only first row Show all	>Lus10017234 pacid=23165750 polypeptide=Lus10017234 locus=Lus10017234.g ID=Lus10017234.BGIv1.0 annot-version=v1.0 MAKTVKLFDAHCHLQDPRVLNKAPQLIAAALDTGVARFAVNGVSEKDWSLVKDMGEQYPSVVPCFGLHPWFIRERTPNWFDTLQEFFEATPTAAVGEISL DKGSHGKTIDFADQVEVLKKQFQLAKELNKPASVHCVRAFGDLLEVMKSMGPFPAGVILHSYLGSAEMVPELAKLGAYFSVSGFLMSMKRQGKEDADSDA TDATPSLNMDNLYLVDSNDSRSEATHAREQNSSTSCENPQASKDASSPLPKETLNHPANIHHVLDHVPSLLELSKEEVAEGSYRNAVRVFTYEGSKLQLE L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17570			TatD related DNase (.1)		Lus10017234 [exp]	0	1
AT5G55060			unknown protein		Lus10043118 [exp]	1.4	0.8567
AT2G20210			RNI-like superfamily protein (...		Lus10011909 [exp]	5.6	0.8613
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Lus10037127 [exp]	8.8	0.8196
AT4G33620			Cysteine proteinases superfami...		Lus10020445 [exp]	9.4	0.8307
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Lus10041386 [exp]	10.1	0.8356
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10032761 [exp]	10.7	0.7818
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10032778 [exp]	11.0	0.8032
AT2G41790			Insulinase (Peptidase family M...		Lus10018071 [exp]	13.9	0.8019
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10037678 [exp]	15.4	0.7929
AT2G18750			Calmodulin-binding protein (.1...		Lus10029852 [exp]	15.5	0.7787

Compare expression of checked genes

Lus10017234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.