Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64830 179 / 9e-55 programmed cell death 2 C-terminal domain-containing protein (.1.2) AT4G02220 60 / 6e-10 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021075 [exp] 408 / 1e-143 AT5G64830 192 / 5e-59 programmed cell death 2 C-terminal domain-containing protein (.1.2) Lus10042748 [exp] 45 / 5e-05 AT4G33270 592 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10029718 [exp] 44 / 9e-05 AT4G02220 349 / 2e-117 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G080500 [exp] 225 / 2e-71 AT5G64830 293 / 7e-97 programmed cell death 2 C-terminal domain-containing protein (.1.2) Potri.002G201200 [exp] 46 / 2e-05 AT4G02220 511 / 0.0 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04194 [flax] [poplar] PDCD2_C Programmed cell death protein 2, C-terminal putative domain
Representative CDS sequence Show only first row Show all	>Lus10017236 pacid=23165857 polypeptide=Lus10017236 locus=Lus10017236.g ID=Lus10017236.BGIv1.0 annot-version=v1.0 ATGGGTAGCTCGCCTGGATGCGAGACCCGTGCTGATAGCTGGCGAGCTCTTCGTGCCCAAAAGTTAGACGATGGCGGGGAACTGGTTATGAATAATGGGA AAGCAGTGCCTTCTTCAACTATGCCTTCAGTCTCTGATTCAAAGGCTAGTTTGCTAGATGAGATGGATGTTGAAGACGATGAAGATATGGATCTTGAAGC TCTAGGTAGAGCATTTTTAGATGCTGGAACGGCCTTGGCTTCTAATTCCAAGAAAGAAGGTCGGAAAAGCCGGTCAGCAGCAGTTTCAAATTCGGTTCCT TTGACTCCAGCAACTAGACTGGTGGACAAGGAGAGTCCAGTGGCTCCTTGTTTCTACCTATATCTTCGGGAGTTAAAATCAGCAAGCCCTGTCGTCTCTC TATCATCAAATTACTCTTCAATTTCCATCAAGGAGAAGCAGCATGCTGATGGTGATGAAGACAGTGATAGTGAAACTTGGGCTCCTGAAACTTACGAGTA TGATTCAGCTTTAAATGCTGACAGAACATACCTCAAGTTCATGAAACAACTTGATGCAAACTCAGAGCAATGTTTCAGGTACAGTTATGGCGGAAAAGCG CTTCTAGCTTCCCAAGAGGTCGTTGACATTGGAAGATGCAAGCTTTGTGGTGGTTCAAGATTTTATGAGATGCAATTGATGCCTTCAATCATACATTTTC TACAAAATGCTTCCGATGACCGTCTGAGGCAAACATTGGAGAACTGGAACTGGCTGACTCTACTTATCTATACATGTGCTAAGAGTTGTTCCGACACAAA GTCTGCCATCGACGGTTGGGTTGTGGCTGAAGAAGGCGTCATCCTGCAGTCCGAGAACACAAAGGTGATATCTCAACTTAGCCAGTTTCGATGA
AA sequence Show only first row Show all	>Lus10017236 pacid=23165857 polypeptide=Lus10017236 locus=Lus10017236.g ID=Lus10017236.BGIv1.0 annot-version=v1.0 MGSSPGCETRADSWRALRAQKLDDGGELVMNNGKAVPSSTMPSVSDSKASLLDEMDVEDDEDMDLEALGRAFLDAGTALASNSKKEGRKSRSAAVSNSVP LTPATRLVDKESPVAPCFYLYLRELKSASPVVSLSSNYSSISIKEKQHADGDEDSDSETWAPETYEYDSALNADRTYLKFMKQLDANSEQCFRYSYGGKA LLASQEVVDIGRCKLCGGSRFYEMQLMPSIIHFLQNASDDRLRQTLENWNWLTLLIYTCAKSCSDTKSAIDGWVVAEEGVILQSENTKVISQLSQFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64830			programmed cell death 2 C-term...		Lus10017236 [exp]	0	1
					Lus10008157 [exp]	2.8	0.7718
AT5G64830			programmed cell death 2 C-term...		Lus10021075 [exp]	3.2	0.7490
AT5G24690			Protein of unknown function (D...		Lus10022966 [exp]	4.5	0.7000
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10001507 [exp]	5.3	0.6940
AT5G14970			unknown protein		Lus10014506 [exp]	8.7	0.6980
AT5G24690			Protein of unknown function (D...		Lus10001610 [exp]	14.4	0.6699
AT4G19510			Disease resistance protein (TI...		Lus10024149 [exp]	15.7	0.6382
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Lus10027807 [exp]	18.4	0.6543
AT1G49230			RING/U-box superfamily protein...		Lus10006788 [exp]	23.2	0.6955
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10000806 [exp]	24.2	0.6380

Compare expression of checked genes

Lus10017236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.