Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52280 103 / 3e-22 Myosin heavy chain-related protein (.1) AT1G22060 102 / 1e-21 unknown protein AT1G63300 102 / 1e-21 Myosin heavy chain-related protein (.1) AT5G41140 54 / 6e-07 Myosin heavy chain-related protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029303 [exp] 766 / 0 AT5G52280 126 / 6e-29 Myosin heavy chain-related protein (.1) Lus10016240 [exp] 541 / 7e-167 AT5G52280 122 / 8e-28 Myosin heavy chain-related protein (.1) Lus10037927 [exp] 232 / 5e-62 AT1G22060 99 / 2e-20 unknown protein Lus10008012 [exp] 109 / 6e-24 AT5G41140 473 / 3e-150 Myosin heavy chain-related protein (.1.2) Lus10024517 [exp] 109 / 9e-24 AT5G41140 482 / 9e-154 Myosin heavy chain-related protein (.1.2) Lus10039218 [exp] 106 / 5e-23 AT5G52280 618 / 0.0 Myosin heavy chain-related protein (.1) Lus10020915 [exp] 105 / 1e-22 AT1G22060 985 / 0.0 unknown protein Lus10033461 [exp] 103 / 5e-22 AT1G22060 978 / 0.0 unknown protein Lus10027462 [exp] 102 / 7e-22 AT1G63300 612 / 0.0 Myosin heavy chain-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G120400 [exp] 478 / 1e-147 AT1G22060 121 / 2e-27 unknown protein Potri.008G029800 [exp] 302 / 1e-84 AT1G22060 117 / 5e-26 unknown protein Potri.015G143800 [exp] 130 / 1e-30 AT5G52280 594 / 0.0 Myosin heavy chain-related protein (.1) Potri.003G124600 [exp] 113 / 4e-25 AT1G63300 810 / 0.0 Myosin heavy chain-related protein (.1) Potri.002G091700 [exp] 103 / 6e-22 AT1G22060 1546 / 0.0 unknown protein Potri.005G170066 [exp] 102 / 9e-22 AT1G22060 1031 / 0.0 unknown protein Potri.012G141200 [exp] 95 / 2e-19 AT5G52280 322 / 7e-95 Myosin heavy chain-related protein (.1) Potri.001G106700 [exp] 54 / 1e-06 AT1G63300 603 / 0.0 Myosin heavy chain-related protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017237 pacid=23165802 polypeptide=Lus10017237 locus=Lus10017237.g ID=Lus10017237.BGIv1.0 annot-version=v1.0 ATGATGTTCAGGCTTCACAAGATCAAGTCGGATAGGTTGTCTTTAGGGGAGAGGATTGATTTCAAGATCTCCCATTTCAAAGCCCTCCAGGTTCCGAGGG GATGGGACAAGCTGTATGTGACGGTGATTTCAGTCGAGACTGGGAAGACCATTGCTAGGCTGAGCAAATCGGCGGTGTCGACGAAGAACGGTTGCTGCGA GTGGAATGAGAGCTTGGCTGAATCTGTCTGGGTTTCCTCCGATGAGCCGTCCAAGGAGCTCGAAGACTGTGTCTTCAAATTCGTCGTCGCAATGGGATCG GCGAGGTCTGGTATTCTTGGGGAGGCAACTGTGAACATGTCGAGCTACATGAAATCTGCTTCCTCTGTTCTTGCTTCGTTCCCTCTGAAGAAATGTAAAT ACGGCACCGTTCTTCAGGCCAAGATTCAGTGCTTAACACCAGTGGTGAATCTCAGGATTGTTTCCAGGGATGGTGATGGAGAAAGGAAGCCTGATCAGGA ATTCGATTCCCCGTTCGATAACAGTCCTGTCTCTTATTCGACTAGCGACACTGCCTCCACGCCTCTCCAGGCCGATCCCGAAACCCGGGAAGCCAGTTCT TCCGCCACGAATTCGCCTCGCAGCGAAGATTCGGAGGAGTTACCAGTTGTCAGCCTTGTAGGAGCAAGAAATGCCGCTTCAGGAGTAGGTTACTTTTCGG ACAGCCTGAATTCAGGCACGGACGGCCAGGATGGATCGTTGAGAATCATGGATTCGTCTTCCCAGGCAATGCTCGAAGCAGCTGAGGAGACGATCGAAGA TCTCAGGGGAACAGGAAAGATGTGGGAGAGGAAAGCCAGGAAGCTGATGTTGGAGATTGACTTCCTGAAGAAGGAAAATCTGGAGCTGACAAGGAACCAG GGAGACTTGGGAATGGAGTTTTCAGAGGCCTGTGCGGAGCGGGATGGATTGAGGAAAGAAGTTGAGCGGCTGAAGCTGATGTTGGTGAAGGCAAATCAAA AGCAGCCTCCTTTAAATGATGATCATCATCAAAATGAAGGTGCATGGGAATTGGCTAAGGAATTGGAAAGGGAGATCAGTTTCCAGAAGCAAGCTAATGG AAACCTGACACTACAGTTGAAGAAGAGCCAGGAGTCGAATCTAGAGCTTGTGGCTGTTCTTCAGGATCTGGAAGAGACATTGGAGAAGCAGAAAGTCGAG ATAGAGGGTCTTTACGATATGGAATCGAGATTCAGCGAGTTGGAAGACGCTCTCGAAGAGAGCTTGGAGAAGAACAGGATTTTGATGGCTCAGATATCTG AAAACCTTCAGGAATCTGAAAACAGACTTGAGGTTGCAATGGCTTCAAAGGAAGCGGAGATTGCAGAGCTTCGGACATACAGAAGTGAAGCGGAAGCCAG GATTCTTGCTCTCGAGAACGAAAAATCATGGATGGAGCTTGACTTGGAATCAGTCACACGAGAGAATGAGATTGCTTCGAGGTGCTTGAACGACCTGCAA AATGATTTAACAATGATTAGCAGCAACGTTGACACTCATGTTTCTGTTAATAAGAAAAGATCGTCGGAGCTAGAACGCGATAAGCAGGCATTGGAGCTTT GTTTGTTGGAGCTGAGGCAGGAAAATGAAGATCTATCAACACACATTGTTGAGTTGGAAACCCGGTTAAGGTCCAAATCGAGTGAAAATGGACTCCGGAT TTGCGATCTTGAAAAGGAACTAAAGAAGAAACTTATCAAAGACCAAACTGAAACTGATGAAACTGTTTCAGCTATAGAGATTCAAAGGCTGAAACTCGAG TCGGAAGTTAAAGTAACTGAACTGTCAACTCAACTTGACGAAAGCAAGACGGAGACAGAACGTCTGGAGACCACTTTACAGGCTAATGAAGAGGAGATTC TTAATCTGCAAAGATGGAAATGTGAGTTAGAAGCCAGAATTTCTGTTATTGAGGAGGAGAAAGACCTCCTGGAGCAGAAGATGGAAGAAATCATGATCGA GAACGATATCACCACAAGGTGCTTCAGCGAGCTACAGACTGAGTTGATTGTGATTGGAAACAGCGTCGATTCTCACATTTCCTCCAAAGAAGGCCTAGAA AGACAAAACCAGAATCTGGAGCAACAATTGTCAAGAATTGTGGAAGAAAATCGAGAGTTGTTGACGCGTATAACTGACTTGGAAACTCAACTAAGATCCA AAGCAGCTAGTGAGCTTGTGTCACTGATGCGAATACTCGAAGAGAAGGAGGAACAGCTAAGGGAAGCTGAAAACAAATGCAGTCATTTGAGTCAAGAGCT TGATAGTGTGAGAAATGAGATGGAAGTTACAGTATCAGAACATAGTAAAGAACTCAGTGAAAGAATGTCAGAGATAAAGTTGAACACGAACAATCAGCTG CTCGAAGTCGATGACGGACATCAAAAGAATGCAGAGATCCAGAGATTGAAGGAAGATCTCGCTGCTTTCGAGGAAAACCATGGAATGCTGGAATCTGAGA GCAGAAGATCATCATGCCTGTTGGAAGACTACAAGTTATCAGAAGAAAAATTTAGAACCGCAATCAATGATCACGAACTAAAGCTCACAGTTTCCGAGTA CGATCGCCAAATTGTGAAAGAAGAAGCCATGAAACTGAAGACCGAGTTGCTGAAACTAGGACCTGTACATGAACAAGTGTTGGCACTGAAGAATGAACTG AGTAGAGCCAAGTCCGAGAAAGAAAATCTTGAATCCTCGTTACAGTCAGTAACCGCTGAATGCCAAATGTTGGAGTCGGAGAAGAATTCCCTTCTCGACA TAATAGCTGTCCTGAAGAAGCTCGTGGCGGAACTAGAGGAACATAAGATGCACAGTGTTGCCCTGGAAGCAAAGCTGAAGCAGACCGAGAACGAATTAAT GGCGAAAGAAGCATTGTGGGAACACGATGAGGACGAACTGAACAAGATAAGGGAAGCCAGCAAGCAGCTACATAAGAGGATACAGGAACTCGAGAACGAG AAGGAACATTGCCTGGAAAGAGACAGAACACTCCAGGAAAAGTTGATCCAGAACCAATCAATCAACAACATAGATCAAAAAGAGGACGATGAACATTCTG AAAGAACGAATCTAAATTCTTCAGAGATCATCCAAACCGAAAGATTCGAGTCGGAATTAGATCAGACTAGTAACAACAACAACAACAACAACAACAGCGG AGAGAAACCTGACCTGAAGAGGATGGAAGAAGAGGAATCGCAGCTGGAACAAGAGCTGCGAGAGATTCGAGAGCGGTACTTACACATGAGCTTGAAGTAC GCGGAGGTGGAAGCTCAGCGAGGGGAGCTTGTGATGAGACTCAGAGCTGCAACTAATGCCAGAGTTTCGTTCTAG
AA sequence Show only first row Show all	>Lus10017237 pacid=23165802 polypeptide=Lus10017237 locus=Lus10017237.g ID=Lus10017237.BGIv1.0 annot-version=v1.0 MMFRLHKIKSDRLSLGERIDFKISHFKALQVPRGWDKLYVTVISVETGKTIARLSKSAVSTKNGCCEWNESLAESVWVSSDEPSKELEDCVFKFVVAMGS ARSGILGEATVNMSSYMKSASSVLASFPLKKCKYGTVLQAKIQCLTPVVNLRIVSRDGDGERKPDQEFDSPFDNSPVSYSTSDTASTPLQADPETREASS SATNSPRSEDSEELPVVSLVGARNAASGVGYFSDSLNSGTDGQDGSLRIMDSSSQAMLEAAEETIEDLRGTGKMWERKARKLMLEIDFLKKENLELTRNQ GDLGMEFSEACAERDGLRKEVERLKLMLVKANQKQPPLNDDHHQNEGAWELAKELEREISFQKQANGNLTLQLKKSQESNLELVAVLQDLEETLEKQKVE IEGLYDMESRFSELEDALEESLEKNRILMAQISENLQESENRLEVAMASKEAEIAELRTYRSEAEARILALENEKSWMELDLESVTRENEIASRCLNDLQ NDLTMISSNVDTHVSVNKKRSSELERDKQALELCLLELRQENEDLSTHIVELETRLRSKSSENGLRICDLEKELKKKLIKDQTETDETVSAIEIQRLKLE SEVKVTELSTQLDESKTETERLETTLQANEEEILNLQRWKCELEARISVIEEEKDLLEQKMEEIMIENDITTRCFSELQTELIVIGNSVDSHISSKEGLE RQNQNLEQQLSRIVEENRELLTRITDLETQLRSKAASELVSLMRILEEKEEQLREAENKCSHLSQELDSVRNEMEVTVSEHSKELSERMSEIKLNTNNQL LEVDDGHQKNAEIQRLKEDLAAFEENHGMLESESRRSSCLLEDYKLSEEKFRTAINDHELKLTVSEYDRQIVKEEAMKLKTELLKLGPVHEQVLALKNEL SRAKSEKENLESSLQSVTAECQMLESEKNSLLDIIAVLKKLVAELEEHKMHSVALEAKLKQTENELMAKEALWEHDEDELNKIREASKQLHKRIQELENE KEHCLERDRTLQEKLIQNQSINNIDQKEDDEHSERTNLNSSEIIQTERFESELDQTSNNNNNNNNSGEKPDLKRMEEEESQLEQELREIRERYLHMSLKY AEVEAQRGELVMRLRAATNARVSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63300			Myosin heavy chain-related pro...		Lus10017237 [exp]	0	1
AT1G53165		ATMAP4KALPHA1 ,...	Protein kinase superfamily pro...		Lus10028163 [exp]	8.6	0.8484
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10011780 [exp]	15.0	0.8302
AT3G15220			Protein kinase superfamily pro...		Lus10042862 [exp]	15.9	0.8207
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10021800 [exp]	19.5	0.8194
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10012134 [exp]	24.7	0.6747
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10019786 [exp]	25.7	0.7460
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10024183 [exp]	27.5	0.7892
AT1G08350			Endomembrane protein 70 protei...		Lus10004873 [exp]	33.0	0.7119
AT2G28780			unknown protein		Lus10005903 [exp]	37.5	0.7640
AT1G52190			Major facilitator superfamily ...		Lus10038614 [exp]	37.9	0.8111

Compare expression of checked genes

Lus10017237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.