Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58050 713 / 0 unknown protein AT2G41960 634 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021073 [exp] 1001 / 0 AT3G58050 984 / 0.0 unknown protein Lus10016244 [exp] 729 / 0 AT3G58050 851 / 0.0 unknown protein Lus10029299 [exp] 701 / 0 AT3G58050 820 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G060200 [exp] 807 / 0 AT3G58050 1131 / 0.0 unknown protein Potri.006G194500 [exp] 791 / 0 AT3G58050 1083 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017239 pacid=23165835 polypeptide=Lus10017239 locus=Lus10017239.g ID=Lus10017239.BGIv1.0 annot-version=v1.0 ATGCCGGGACTACCTCAGGAGAATGAGCAATTCAGTAATGCTTCGTCTGCGGTGTACTCCGTTTCTGGCAATGGATTTTGGTCCAAACATAGCGATGTCG TCGGATACAATCAGCTCCAGAAGTTCTGGAGTGAACTGTCGATTCCTGCTAGGCAGAAGCTGCTTAGAATAGACAAGCATACTTTGTTTGAGCAAGCTCG TAAGAATATGTACTGTTCTAGGTGCAATGGGCTATTGCTTGAAGGGTTTCTGCAGATTGTCGTCCATAGGAAGTCATTGCAGCAGGATGCAGGCGCAAAC ATTCCCTCCCACAGACTTGGAGCCTCAAGATATCAAACGGATGGTGTGGCAAATATGATAACCGGGTGCCAAGATGAAATGCAAGATCCAGGTGTACATG CTTGGGGCGGTCTAACAACAACACGGGAGGGATCCTTAACACTTCTGGATTGTTATTTATGTTCAAAATCTCTTACAGGACTTCAAAATGTCTTTGATAG TGCGCGTGCACGGGAACGGGAAAGGGAGCTCCTCTATCCGGATGCTTGTGGTGGAGGAGGTCGGGGTTGGATAAGTCAAGGGATCGCAAGTTATAGTAGA GGCCACGGAACTAGAGAAACATGCGCGCTACACAATGCCAGGCTTTCATGTGATACACTTGTGGATTTCTGGTCAGCACTAGGAGAAGAGACAAGACAGT CTCTTCTTAGGATGAAGGAAGAGGACTTCATTGAGCGGCTCATGTACAGATTTGACAGCAAGAGATTCTGCAGAGACTGTAGGAGGAATGTTATCCGCGA ATTCAAGGAGCTAAAGGAACTGAAGCGTATGCGGAGAGAAACACGGTGCACTAGTTGGTTTTGCGCTGCAGATACTTCTTTCCAATATGAGGTGTCAGAT GAGATGGTCCAAGCTGATTGGCACCAAACTTTTGCAGATTCTGTCGGGATGTACCATCACTTTGAATGGGCTATTGGAACAGGAGAAGGGAAGTCTGACA TTCTAGAATATGAAAATGTAGGCATGAGTGAGAGCGTGCAAGTCGATGGATTGGATCTTAGTGATTTGACAGCATGCTTTATCTCTCTGAGGGCTTGGAA AATGGATGGCCGGTGCACAGAGTTATCTGTGAAAGCCCATGCATTGAAGGGTCAACAGTGCGTTCATTGCAGGTTAATAGTCGGTGATGGATTTGTTACA ATTACTAGAGGAGATAGCATCAGAAGTTTTTTTGAGCATGCTGAAGAGGCCGAGGAAGAAGAGGATGATGACTCCATGGAGAAAGACGGAAATGAGCTTG ATGGAGAATGCTCTCGTCCCCAAAAGCATGCGAAGAGTCCTGAACTTGCCCGAGAATTTCTTCTAGATGCAGCTACCGTTGAAAAGGCTTTCAGAGAAGG AACTGCACGTCAGAATGCCCACAGCATTTTTGTCTGCCTTGCACTAAACCTGCTGGAAGAACGAATCCATATTGCATGTAAAGAAATCATTACCTTGGAA AAGCAGATGAAATTGCTCGAAGAAGAAGAGAAGGAAAAGCGTGAAGAAGAAGAGCGCAAGGAGAGGAGAAGATTAAAAGAAAGAGAAAAGAAGCTTCGAA GAAAAGAGAGGTTAAAAGGAAAGGAAAGGGATAAAGATAAGAATAGTTGTGATTCAAATGATGCTCCTCTTCTTATTGATGNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGCGAA GTTAAAGGGCACTCCGATGATACCAATGGTAATGACTGCAAATCGAATGATGCTATAGATTCTAGTGCTGGGGCAGAGGAAGGGTTCCAGGATCAGTGTA GTAGTGTGGCAGTGAAGGGCTCTCATTACGAAGAAGTCAATTCAAATCCATCCCCTCCAAATGGCTCAACATCTACTGCTACGTCCAATCCCAGCTCGAT TAGTGCCTCGAATTCTGATAATGGCTCTTGTGTGAGTGAAGGAGATAGCAACATAGCCTCTTCAAATCACAGAAACCTGGAATCCTCTTCCACTTCGGAC TCCGAAGATGCCAGCCAGCAATCAGAAGGAAGAGAAACTTCACTGTGCAATCAGAACAGTTTCTCCGAATCTCACGACGCAGGAATTCAGAATAAACCAG GCACAACCAATGGGCAACCTCTTAACAGTATGAAGTTCTCTGGAGTTCCACGAGACGGTTCAAAAGCAAGCATTACTACTACTACTACTACCAATAATGG TAGTGCAGGTCCACAACACCAAGGCACGTTTACCCCACTGCACAACCAGAACTTACAGTATCCAGTGGTTCAAGCTCCTTCAACAATAAATTACTATCAT CAGAATCCGGTTTCTTGGCCAGCCGCTGCACCACCAATGCCGTTTCACCAACCCAACCACTATTTATACTCCGGTACAGTAGGGTACATGCCCTATACTC CAATGCAGCATTTGACTACTCCCATGTTCAATCCGAGCCCACTACCTCAAGCTTACCATCCAAAGGGTTTTGGTACCGAGCCGCAGCAGACGTGCAGAGT GCAGGAACCGGTCCACACAGAGAAAAGACCTCAAGGTCGTAAGATCGACAGCTTTGCGAAGCTGCACTCGGAAAACAGTGATTTCTCGCTGTTCCAATTC GGATGGCCTCCGTCTGGAGATGTCATGTCGAAAGTCTCGGCAGCAGATCAGATCGGAAACTATACTGAACAGAATAAGAGGGAGACAATCGGGGAAGAGT ACAACTTGTTTGCATCGAGTCACGGCCCGAAGTTCTCGTTCTTCTAA
AA sequence Show only first row Show all	>Lus10017239 pacid=23165835 polypeptide=Lus10017239 locus=Lus10017239.g ID=Lus10017239.BGIv1.0 annot-version=v1.0 MPGLPQENEQFSNASSAVYSVSGNGFWSKHSDVVGYNQLQKFWSELSIPARQKLLRIDKHTLFEQARKNMYCSRCNGLLLEGFLQIVVHRKSLQQDAGAN IPSHRLGASRYQTDGVANMITGCQDEMQDPGVHAWGGLTTTREGSLTLLDCYLCSKSLTGLQNVFDSARARERERELLYPDACGGGGRGWISQGIASYSR GHGTRETCALHNARLSCDTLVDFWSALGEETRQSLLRMKEEDFIERLMYRFDSKRFCRDCRRNVIREFKELKELKRMRRETRCTSWFCAADTSFQYEVSD EMVQADWHQTFADSVGMYHHFEWAIGTGEGKSDILEYENVGMSESVQVDGLDLSDLTACFISLRAWKMDGRCTELSVKAHALKGQQCVHCRLIVGDGFVT ITRGDSIRSFFEHAEEAEEEEDDDSMEKDGNELDGECSRPQKHAKSPELAREFLLDAATVEKAFREGTARQNAHSIFVCLALNLLEERIHIACKEIITLE KQMKLLEEEEKEKREEEERKERRRLKEREKKLRRKERLKGKERDKDKNSCDSNDAPLLIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCE VKGHSDDTNGNDCKSNDAIDSSAGAEEGFQDQCSSVAVKGSHYEEVNSNPSPPNGSTSTATSNPSSISASNSDNGSCVSEGDSNIASSNHRNLESSSTSD SEDASQQSEGRETSLCNQNSFSESHDAGIQNKPGTTNGQPLNSMKFSGVPRDGSKASITTTTTTNNGSAGPQHQGTFTPLHNQNLQYPVVQAPSTINYYH QNPVSWPAAAPPMPFHQPNHYLYSGTVGYMPYTPMQHLTTPMFNPSPLPQAYHPKGFGTEPQQTCRVQEPVHTEKRPQGRKIDSFAKLHSENSDFSLFQF GWPPSGDVMSKVSAADQIGNYTEQNKRETIGEEYNLFASSHGPKFSFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58050			unknown protein		Lus10017239 [exp]	0	1
AT3G58050			unknown protein		Lus10016244 [exp]	1.7	0.9121
AT2G40980			Protein kinase superfamily pro...		Lus10035407 [exp]	2.8	0.8999
AT5G35160			Endomembrane protein 70 protei...		Lus10027831 [exp]	4.9	0.8793
AT5G35160			Endomembrane protein 70 protei...		Lus10005060 [exp]	5.5	0.8959
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002913 [exp]	7.1	0.8582
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013467 [exp]	7.3	0.8564
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10031476 [exp]	7.9	0.8804
AT5G54830			DOMON domain-containing protei...		Lus10034323 [exp]	8.1	0.8847
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	9.8	0.8883
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10020003 [exp]	12.1	0.8486

Compare expression of checked genes

Lus10017239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.