Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12050 438 / 1e-154 Aha1 domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021072 [exp] 563 / 0 AT3G12050 523 / 0.0 Aha1 domain-containing protein (.1.2) Lus10013024 [exp] 172 / 2e-50 AT2G18770 223 / 2e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G060100 [exp] 454 / 5e-161 AT3G12050 480 / 5e-171 Aha1 domain-containing protein (.1.2) Potri.006G194400 [exp] 453 / 1e-160 AT3G12050 473 / 3e-168 Aha1 domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF08327 [flax] [poplar] AHSA1 Activator of Hsp90 ATPase homolog 1-like protein CL0648 [flax] [poplar] Aha1_BPI PF09229 [flax] [poplar] Aha1_N Activator of Hsp90 ATPase, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10017240 pacid=23165784 polypeptide=Lus10017240 locus=Lus10017240.g ID=Lus10017240.BGIv1.0 annot-version=v1.0 ATGGCCAAGCTCGGAGAAGGCGACAAGCGCTGGATCGTCGAAGAACGCTCCGATGGGACCAACGTCCACAACTGGCACTGGGCGGAGACCGACTGCCTGG AATGGTCGCGGAACCTCCTCGCCAAGCTCCTCTCAAACCTCACCGTCCTCGACGGCGAAGGAAACCTCTTCGTCCGGACGAAGAAGGTCGAGAAAGTGGA CGGCGAGTCGTATGTCAACATCCGCAAAGGCAAAATCATCCCCGGATACGAGCTCAGCGTCTCGGTCTCGTGGGAAGGCGAGGCGAAGGACGCCGAGGGG AAGAGCTTGCTCAAGGTCGATGGATCTGTCGAGATTCCGTACATCTCGGACGAGAACGCGGACGAGGATCCCGAAATTAGGGTTACGGTGAAGGACGACG GCCCGGTCGGGAGGAGGTTGAAGGAGGCTATGCTGGGTAGGGGGAAGGCTGGGGGGGCGGAGCGGATCAGGAAGGGGAAGCCTGTGATTGAGGAGAAGGT CAGGGTTTACGTCAAGACTATGGCTCAGGGAGGTCCTGCTAAGGATGAGATGGAGGCTAAGAAGGTAGCGCCGAAGGCAACGACGTCGAAGAAGGAGGAG CCGGCTGCGCCAGCAGCGGTGGAGAAAAAGGATGTGAAACCTAAGGCGAGTACTCAGAGTAAGAAAGGGTTTAAGACCATAAGCTTGACTGAGAAGTTCA GCTGCAGGGCGAAGGATTTGTTCGAGATACTGCTGGATGAGAACAGGTGGAAAGGATTCACGCAGAGCAATGCCAAGATTAGTAAGGAAGTTGGTGGAGA GTTTGCAATTTTTGATGGGTCCGTTACAGGATCGAATGTCGAGCTGCAGGAGGGGAAACTGATTGTGCAGAAGTGGAGGTTCGGGAGCTGGCCTGATGGG ATCATCTCCACTGTGAGACTCACATTGGAAGAACCTGAAGCTGGTGTGACGGTGGGGAGAGTGAGTCACACTAATATACCCGGGGAGGGTAGGATATGGG AATGCAACTGTGGTGGAGAACACTGA
AA sequence Show only first row Show all	>Lus10017240 pacid=23165784 polypeptide=Lus10017240 locus=Lus10017240.g ID=Lus10017240.BGIv1.0 annot-version=v1.0 MAKLGEGDKRWIVEERSDGTNVHNWHWAETDCLEWSRNLLAKLLSNLTVLDGEGNLFVRTKKVEKVDGESYVNIRKGKIIPGYELSVSVSWEGEAKDAEG KSLLKVDGSVEIPYISDENADEDPEIRVTVKDDGPVGRRLKEAMLGRGKAGGAERIRKGKPVIEEKVRVYVKTMAQGGPAKDEMEAKKVAPKATTSKKEE PAAPAAVEKKDVKPKASTQSKKGFKTISLTEKFSCRAKDLFEILLDENRWKGFTQSNAKISKEVGGEFAIFDGSVTGSNVELQEGKLIVQKWRFGSWPDG IISTVRLTLEEPEAGVTVGRVSHTNIPGEGRIWECNCGGEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12050			Aha1 domain-containing protein...		Lus10017240 [exp]	0	1
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Lus10011450 [exp]	1.0	0.9629
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10005953 [exp]	2.4	0.9598
AT3G52960			Thioredoxin superfamily protei...		Lus10002843 [exp]	4.5	0.9422
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027517 [exp]	4.7	0.9621
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025333 [exp]	4.9	0.9227
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Lus10037545 [exp]	5.7	0.9557
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10028919 [exp]	5.9	0.9492
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10031877 [exp]	7.2	0.9193
AT3G48690		ATCXE12	ARABIDOPSIS THALIANA CARBOXYES...		Lus10027909 [exp]	7.3	0.9084
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	8.5	0.9507

Compare expression of checked genes

Lus10017240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.