Plant FIBer expression Database

Lus10017241 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12040 345 / 1e-120 DNA-3-methyladenine glycosylase (MAG) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021071
[exp]
493 / 3e-179 AT3G12040 341 / 4e-119 DNA-3-methyladenine glycosylase (MAG) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G060000
[exp]
365 / 8e-129 AT3G12040 365 / 5e-129 DNA-3-methyladenine glycosylase (MAG) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02245 Pur_DNA_glyco Methylpurine-DNA glycosylase (MPG)
Representative CDS sequence
>Lus10017241 pacid=23165821 polypeptide=Lus10017241 locus=Lus10017241.g ID=Lus10017241.BGIv1.0 annot-version=v1.0
ATGAAGACGACGACTCCCCGTCGAGAAACGGCAGCCGGGAAATCGAGGAAACACAACAAGTCCCTCAAACTACGGAAAGAAATCGAGGCAGTAGCTACAT
CAGCTGGATTAACGGCTAAATCCGGAGCCAGAGGCAAGCGCCAGCAGCCTCGACCGGAACCCATGACTCTCTCGATTCCATTTTCACCTTCCCACAATTA
TTCCATCTTGGCTCCGGAGTTCTTCCAGGTTGACGCTCTCGATTTAGCCCCTCGGTTGCTAGGCAAGCTCCTCCGCAGAGATGACGTCATTCTTCAGATT
ACCGAGGTGGAAGCTTACAGACAGAATGATTCAGCTTGCCATGGTAGATTTGGCATCACACCGAGAACAGCTCCAGTGTTTGGACCAGGAGGCCATGCCT
ATGTTTATCTGTGCTACGGGCTGCACACAATGTTGAATGTTGTTGCTGATAAGAAAGGAGTTGGGGCCACTGTTCTTGTACGTTCTTGTGCTCCTGTTAG
TGGTTTGGACACGATTCAGAGGCGTCGAGGTCAGGAGACCGAGAAGCCTGTGCTCCTCACTGGACCTGGTAAGATTGGACAAGCACTGGGGATTTCAACA
GACTGGTCTAACCACCCCCTCTATTCCCCTGGCGGTCTGGAAATGTTGGATGCACCGGAGCCAGAGAAGATACTGGTCGGTCCACGCGTCGGCATCAACT
ATGCCCTGCCTGAACATGTCAACGCATTATGGAGGTTCGCCGTTGCTGGTAGCCCATGGATAAGTGCTCCTAGAAACACCCTAAGGTCTCCCTGA
AA sequence
>Lus10017241 pacid=23165821 polypeptide=Lus10017241 locus=Lus10017241.g ID=Lus10017241.BGIv1.0 annot-version=v1.0
MKTTTPRRETAAGKSRKHNKSLKLRKEIEAVATSAGLTAKSGARGKRQQPRPEPMTLSIPFSPSHNYSILAPEFFQVDALDLAPRLLGKLLRRDDVILQI
TEVEAYRQNDSACHGRFGITPRTAPVFGPGGHAYVYLCYGLHTMLNVVADKKGVGATVLVRSCAPVSGLDTIQRRRGQETEKPVLLTGPGKIGQALGIST
DWSNHPLYSPGGLEMLDAPEPEKILVGPRVGINYALPEHVNALWRFAVAGSPWISAPRNTLRSP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G12040 DNA-3-methyladenine glycosylas... Lus10017241
[exp]
0 1
AT5G46795 MSP2 microspore-specific promoter ... Lus10000907
[exp]
16.4 0.6379
AT4G35930 F-box family protein (.1) Lus10025956
[exp]
17.4 0.7088
AT1G78580 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE... Lus10015243
[exp]
71.1 0.6256
AT1G01690 ATPRD3 ARABIDOPSIS THALIANA PUTATIVE ... Lus10014774
[exp]
76.2 0.6207
AT5G50170 C2 calcium/lipid-binding and G... Lus10015665
[exp]
146.7 0.6021
AT3G62200 Putative endonuclease or glyco... Lus10038949
[exp]
160.6 0.6062

Lus10017241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.