Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41970 543 / 0 Protein kinase superfamily protein (.1) AT3G59350 462 / 7e-164 Protein kinase superfamily protein (.1.2.3) AT2G43230 460 / 3e-162 Protein kinase superfamily protein (.1.2) AT1G06700 456 / 2e-161 Protein kinase superfamily protein (.1.2) AT2G30740 456 / 2e-161 Protein kinase superfamily protein (.1) AT2G47060 441 / 1e-155 PTI1-4 Pto-interacting 1-4, Protein kinase superfamily protein (.1.2.3.4.5) AT3G62220 436 / 2e-153 Protein kinase superfamily protein (.1) AT3G17410 434 / 2e-152 Protein kinase superfamily protein (.1) AT2G30730 426 / 7e-150 Protein kinase superfamily protein (.1) AT1G48210 416 / 1e-145 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021070 [exp] 675 / 0 AT2G41970 562 / 0.0 Protein kinase superfamily protein (.1) Lus10016247 [exp] 632 / 0 AT2G41970 563 / 0.0 Protein kinase superfamily protein (.1) Lus10029295 [exp] 630 / 0 AT2G41970 562 / 0.0 Protein kinase superfamily protein (.1) Lus10026706 [exp] 468 / 5e-166 AT3G59350 613 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025498 [exp] 470 / 6e-166 AT3G59350 630 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025496 [exp] 467 / 2e-165 AT3G59350 610 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10026708 [exp] 468 / 3e-165 AT3G59350 625 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10010072 [exp] 454 / 1e-160 AT3G62220 592 / 0.0 Protein kinase superfamily protein (.1) Lus10038042 [exp] 454 / 1e-160 AT3G62220 588 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G059600 [exp] 580 / 0 AT2G41970 600 / 0.0 Protein kinase superfamily protein (.1) Potri.006G194000 [exp] 573 / 0 AT2G41970 586 / 0.0 Protein kinase superfamily protein (.1) Potri.017G036300 [exp] 476 / 8e-169 AT3G59350 632 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.007G124000 [exp] 468 / 8e-166 AT2G43230 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G188600 [exp] 451 / 1e-159 AT3G62220 595 / 0.0 Protein kinase superfamily protein (.1) Potri.014G114200 [exp] 446 / 1e-157 AT3G62220 577 / 0.0 Protein kinase superfamily protein (.1) Potri.010G001500 [exp] 407 / 4e-142 AT1G48210 494 / 3e-176 Protein kinase superfamily protein (.1.2) Potri.013G025700 [exp] 253 / 6e-81 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 261 / 2e-80 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.002G254600 [exp] 259 / 6e-80 AT2G20300 947 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10017242 pacid=23165746 polypeptide=Lus10017242 locus=Lus10017242.g ID=Lus10017242.BGIv1.0 annot-version=v1.0 ATGTTCTGCTGTGGAGATGCAGAGGAGGAACCTTACCCACCTGCTAATCAATACACTGCCCCTCCCAAAGGCAGTCCTTATGGCGCAATGGACCAAAAGA CAGCGCCAAGAGGCGTACCACAGAAGATGTTACCAATTGAGACACCAGCCATTTCCTTGGAAGAGCTCAACAAATTAACGGACAGCTTCGGACAGAAGTC GCTGATCGGAGAAGGCTCCTATGGCCGTGTCTTCTACGCCACGTTAAGAGACGGTATCCCTGCTGCAATCAAGAAGCTAGATACCAACACTTCCCAAGAA CCTGACACCGATTTCAACGCCCAGCTATCGGTGGTTTCGAGATTGAAAAACGAACACTTTCTGGAACTAATCGGGTATTGTATGGAGGCAAACAACAGGA TCTTGGTCTATCAGTATGCCTCCATGGGTTCATTACATGATGTGTTACATGGGAGGAAAGGGGTACAAGGGGCTGAGCCAGGTCCAGCTCTGAACTGGAG CCAAAGAGCTAAGATAGCTTTCGGAGCGGCCAAAGGGTTAGAGTTCCTACACGAGAAATGTCAACCCTCTATAGTCCATAGGGATGTTAGGTCGAGCAAT GTTCTTCTCTTTGACGATTTCAGCTCCAAGATAGCAGATTTCAACATCTCCAGTGCGACCTCTGATACTGCAGCGCGATTGCATTCGACTCGTGTGTTGG GAACATTCGGATACCACGCCCCCGAGTATGCTATGATGGGACAAATAACTCAGAAGAGCGATGTCTATAGTTTTGGTGTGGTCTTACTAGAGCTTTTGAC TGGTAGAAAGCCTGTAGACCATACGATGCCTAAAGGCCAACAGAGTCTTGTTACATGGGCTACACCGCGATTGAGCGAAGACAAAGTAAAGCAATGTGTG GATCCCAAGCTGAACAATGAGTACCCACCAAAAGCGGTTGCCAAGTTAGCAGCAGTAGCAGCACTTTGTGTTCAGTACGAGGCGGATTTTAGGCCGAATA TGACGATCGTGGTGAAGGCTCTTCAGCCGTTGCTCAACTCGAAACCAGCTGGTCCGGGGCCTACTCCTCCTGCTTGA
AA sequence Show only first row Show all	>Lus10017242 pacid=23165746 polypeptide=Lus10017242 locus=Lus10017242.g ID=Lus10017242.BGIv1.0 annot-version=v1.0 MFCCGDAEEEPYPPANQYTAPPKGSPYGAMDQKTAPRGVPQKMLPIETPAISLEELNKLTDSFGQKSLIGEGSYGRVFYATLRDGIPAAIKKLDTNTSQE PDTDFNAQLSVVSRLKNEHFLELIGYCMEANNRILVYQYASMGSLHDVLHGRKGVQGAEPGPALNWSQRAKIAFGAAKGLEFLHEKCQPSIVHRDVRSSN VLLFDDFSSKIADFNISSATSDTAARLHSTRVLGTFGYHAPEYAMMGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCV DPKLNNEYPPKAVAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPAGPGPTPPA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41970			Protein kinase superfamily pro...		Lus10017242 [exp]	0	1
					Lus10001825 [exp]	3.9	0.9467
AT5G49180			Plant invertase/pectin methyle...		Lus10003968 [exp]	5.3	0.8482
AT3G13690			Protein kinase protein with ad...		Lus10009559 [exp]	6.5	0.9388
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Lus10011787 [exp]	8.0	0.9344
AT5G15110			Pectate lyase family protein (...		Lus10030791 [exp]	8.3	0.9375
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10016437 [exp]	9.3	0.8332
					Lus10018446 [exp]	9.5	0.8300
AT5G65090		DER4, MRH3, BST...	DEFORMED ROOT HAIRS 4, BRISTLE...		Lus10041708 [exp]	9.8	0.8220
AT5G65530			Protein kinase superfamily pro...		Lus10012727 [exp]	11.0	0.9299
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	12.2	0.9269

Compare expression of checked genes

Lus10017242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.