Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13410 527 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 364 / 1e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 368 / 2e-119 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 366 / 9e-119 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 355 / 4e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G44880 347 / 1e-113 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G26782 348 / 7e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 343 / 1e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18840 332 / 7e-108 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G08820 334 / 6e-107 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021069 [exp] 1000 / 0 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021068 [exp] 1000 / 0 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 372 / 5e-121 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 359 / 2e-117 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 362 / 5e-117 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 358 / 3e-116 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019797 [exp] 355 / 4e-116 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039974 [exp] 352 / 2e-115 AT1G06150 612 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10003422 [exp] 348 / 2e-113 AT2G44880 679 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G121400 [exp] 747 / 0 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 400 / 1e-131 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G258766 [exp] 377 / 2e-125 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.018G040100 [exp] 381 / 2e-124 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G125500 [exp] 375 / 1e-123 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 374 / 1e-121 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G087100 [exp] 358 / 3e-117 AT3G29230 368 / 1e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G217900 [exp] 359 / 6e-117 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.006G105700 [exp] 357 / 1e-115 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 351 / 3e-114 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10017243 pacid=23165814 polypeptide=Lus10017243 locus=Lus10017243.g ID=Lus10017243.BGIv1.0 annot-version=v1.0 ATGTTTAGTGGCTATTATCAAAACTCTTTGCACCGTGAAGTTATTTATGCGTTCAGTCGGATGAAGAGTTTGGATATATTTCCCAACAGTTACAGTTTCC CTGTTGTCCTGAAATCTTGTGTAAAGCTCAATGCTCTGAGTGAAGGGGAAGAGCTGCACTGCATCGTGATAAAGACCGGATTCAAATCAAACCCGTTCGT TGGAACCACGTTGATCGAGCTGTACTCGAGCGTGAATCTGATCGAACCAGCTTACCGGGTGTTCCGTGAGATGCTGGAAAGAAATGTCGTAGCCTGGACT GCAATGATCAACGGCTACATTTCCTGCCATGACATGACTTCCGCAAGGCAGCTCTTTGACTTGGCTCCTGACCGTGATGTCGTGCTCTGGAACACCATGG TTTCTGCCTACATTGGGATAGGAGATATGATAAGCGCCAAAGAGCTTTTTGATAAGATGAGTAAAAAGGATGTCATGTCTTGGAATACTGTATTGAATGG GTACGCAAACAACGGCGATATTGATGCCTGTGAGAGATTCTTCGAGGAAATGCCGGAAAGAAACGTTTTTTCGTGGAATGGACTGCTTGGTTGTTTTGCT CATAACGGATGCTTTCCTAAGGTGATTACTACTTTCAAGAGAATGCTTGCCGAGAAGAATGTCACTCCCAATGATGCAACATTCGTGATAGTGTTATCCG CTTGTGCAAGGTTAGGAGCTCTGGATCTAGGCAGGTGGATTCATGTTCATGCAAAGGCTAGTGGATATAACGAAAATCTCTACGTTGGGAATGCTCTGAT CGACATGTATGCGAAATGTGGAGTCATGGAAAGTGCAGTGGAGGTATTCAGAAGCATGAAAAGAAAGGATTTGATTAGCTGGAATACCATAATCTGTGGA TTAGCAAGCCATGGTCATGGATCCGATGCCTTGAATATGTTCGCCGAAATGAAGAATGCTGGAGAAAGGCCGGATGCTATCACTTTCATAGGAATCATGT CGGGGTGCATTCACATGGGTTTCGTCCAGGGCGGGTTTTCGTATTTCCAATCAATGATCGAGGACTACTCAATCGAGCCTCGGATCGAGCATTACGGATG CATGGTTGATTTGCTAGCAAGAGCCGGTCTTTTAGCTCAGGCTGTGGATTTCATCTACGGAATGCCTATCAAAGCTGATGCTATCATGTGGGCTACTCTG CTTGCGGCTTGTAGAGTGTACAAAAATGTCGAGTTTGCTGAGCTGGCGCTCGGGAAGCTGGTGGAATTCGATTCGAGGAATCCGGCAAACTACGTGATGC TGTCGAACGTCTATGGTGACGTTGGTAGGTGGAAAGATCTGGCCAGATTGAAAGTTGCGATGAGGGATACCGGGTTGAAGAAGATGCCCGGGAGTAGCTC GATTGAGGTCGATGATGTTGTATCGGAATTCTATTCGCTGGACGAGAGGCACGCTGACTCGAAGCGGATTTATGAAGCTTTGAAGGGATTGACGCAGCTG TCGAGATTGAACTGTTGTATTCCTGAAAGAGACACTGATATTTATATAAAATGA
AA sequence Show only first row Show all	>Lus10017243 pacid=23165814 polypeptide=Lus10017243 locus=Lus10017243.g ID=Lus10017243.BGIv1.0 annot-version=v1.0 MFSGYYQNSLHREVIYAFSRMKSLDIFPNSYSFPVVLKSCVKLNALSEGEELHCIVIKTGFKSNPFVGTTLIELYSSVNLIEPAYRVFREMLERNVVAWT AMINGYISCHDMTSARQLFDLAPDRDVVLWNTMVSAYIGIGDMISAKELFDKMSKKDVMSWNTVLNGYANNGDIDACERFFEEMPERNVFSWNGLLGCFA HNGCFPKVITTFKRMLAEKNVTPNDATFVIVLSACARLGALDLGRWIHVHAKASGYNENLYVGNALIDMYAKCGVMESAVEVFRSMKRKDLISWNTIICG LASHGHGSDALNMFAEMKNAGERPDAITFIGIMSGCIHMGFVQGGFSYFQSMIEDYSIEPRIEHYGCMVDLLARAGLLAQAVDFIYGMPIKADAIMWATL LAACRVYKNVEFAELALGKLVEFDSRNPANYVMLSNVYGDVGRWKDLARLKVAMRDTGLKKMPGSSSIEVDDVVSEFYSLDERHADSKRIYEALKGLTQL SRLNCCIPERDTDIYIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10017243 [exp]	0	1
AT1G08410			P-loop containing nucleoside t...		Lus10004103 [exp]	1.4	0.8377
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10030415 [exp]	3.5	0.8476
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Lus10033676 [exp]	4.0	0.8272
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10006628 [exp]	4.9	0.7991
AT3G47530			Pentatricopeptide repeat (PPR)...		Lus10000274 [exp]	5.7	0.7754
AT3G19950			RING/U-box superfamily protein...		Lus10018167 [exp]	7.1	0.7317
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031430 [exp]	8.1	0.8357
AT5G28460			Pentatricopeptide repeat (PPR)...		Lus10018279 [exp]	10.2	0.8153
AT4G16835			Tetratricopeptide repeat (TPR)...		Lus10010998 [exp]	11.5	0.7443
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	11.8	0.8216

Compare expression of checked genes

Lus10017243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.