Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06690 152 / 9e-47 WCRKC1 WCRKC thioredoxin 1 (.1.2) AT5G04260 100 / 9e-27 WCRKC2 WCRKC thioredoxin 2 (.1) AT4G03520 53 / 6e-09 ATHM2 Thioredoxin superfamily protein (.1.2) AT1G03680 49 / 2e-07 ATHM1, ATM1, TRX-M1 ARABIDOPSIS THIOREDOXIN M-TYPE 1, thioredoxin M-type 1 (.1) AT3G15360 46 / 2e-06 ATHM4, ATM4, TRX-M4 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) AT1G50320 44 / 2e-05 ATHX, ATX thioredoxin X (.1) AT1G19730 42 / 3e-05 ATTRX4, ATH4 thioredoxin H-type 4, Thioredoxin superfamily protein (.1) AT1G45145 39 / 0.0002 LIV1, ATTRX5, ATH5 LOCUS OF INSENSITIVITY TO VICTORIN 1, thioredoxin H-type 5 (.1) AT5G39950 39 / 0.0003 ATTRXH2, ATTRX2, ATH2 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) AT1G69880 38 / 0.001 ATH8 thioredoxin H-type 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021067 [exp] 249 / 3e-85 AT5G06690 215 / 3e-71 WCRKC thioredoxin 1 (.1.2) Lus10038703 [exp] 99 / 1e-25 AT5G04260 191 / 2e-61 WCRKC thioredoxin 2 (.1) Lus10037975 [exp] 73 / 5e-17 AT5G04260 149 / 3e-47 WCRKC thioredoxin 2 (.1) Lus10013827 [exp] 41 / 9e-05 AT3G53220 172 / 2e-56 Thioredoxin superfamily protein (.1) Lus10039499 [exp] 41 / 0.0001 AT3G06730 238 / 9e-81 thioredoxin putative plastidic, Thioredoxin z (.1) Lus10036698 [exp] 40 / 0.0001 AT1G69880 113 / 5e-33 thioredoxin H-type 8 (.1) Lus10005258 [exp] 40 / 0.0002 AT5G39950 189 / 4e-63 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) Lus10030666 [exp] 40 / 0.0002 AT5G39950 189 / 3e-63 Arabidopsis thioredoxin h2, thioredoxin 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G059500 [exp] 154 / 8e-48 AT5G06690 212 / 4e-70 WCRKC thioredoxin 1 (.1.2) Potri.010G225701 [exp] 104 / 3e-28 AT5G04260 204 / 3e-67 WCRKC thioredoxin 2 (.1) Potri.008G036400 [exp] 103 / 5e-28 AT5G04260 216 / 8e-72 WCRKC thioredoxin 2 (.1) Potri.019G111200 [exp] 45 / 3e-06 AT4G03520 172 / 9e-55 Thioredoxin superfamily protein (.1.2) Potri.017G076700 [exp] 44 / 1e-05 AT5G39950 168 / 7e-55 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) Potri.006G123100 [exp] 40 / 0.0002 AT3G53220 192 / 2e-64 Thioredoxin superfamily protein (.1) Potri.001G028500 [exp] 40 / 0.0003 AT3G06730 244 / 2e-83 thioredoxin putative plastidic, Thioredoxin z (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10017244 pacid=23165759 polypeptide=Lus10017244 locus=Lus10017244.g ID=Lus10017244.BGIv1.0 annot-version=v1.0 ATGGCTGCAACTGCTGCTTTGACGACGGCGTGTTCTCCCATAATCTCCTCTCGAGAGTTCCACAGCAAATACCAACATCAACAACAACAGGGATTGACCA GCTGCCCCCTCTTCAGCACCGCTTCCTCTTCTTCTTCTTTGTATTCTGGTAGAAGAAATAACAGCGAGCATTATCAGGGGAGGAAAGTTTCCGACTTTAG AGCTTTCGGGTTCTGGCCCGATTTGAGATCCAAACCCACTTCCGTCGACATGGAACCCATCAACGATTCGGAGCAGCTGGATCAGATCCTGCTCCATGCT AAGGAGCTCGCTCAACCTGTCGTCATTGACTGGATGGCGTCGTGGTGCAGGAAGTGCATATACTTAAAGCCGAAGCTAGAGAAATTAGCTGCCGAATTCG ACAACAAAGCGAAGTTCTACTGCGTGGATGTGAACAAGGTGCCTCAGGCTCTGGTGAAGCGCGGCAACATATCTGTACGGTCGATAAGCTATTTGATGAA ATGCCTCAATGTAAAGTTGTTATAA
AA sequence Show only first row Show all	>Lus10017244 pacid=23165759 polypeptide=Lus10017244 locus=Lus10017244.g ID=Lus10017244.BGIv1.0 annot-version=v1.0 MAATAALTTACSPIISSREFHSKYQHQQQQGLTSCPLFSTASSSSSLYSGRRNNSEHYQGRKVSDFRAFGFWPDLRSKPTSVDMEPINDSEQLDQILLHA KELAQPVVIDWMASWCRKCIYLKPKLEKLAAEFDNKAKFYCVDVNKVPQALVKRGNISVRSISYLMKCLNVKLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06690		WCRKC1	WCRKC thioredoxin 1 (.1.2)		Lus10017244 [exp]	0	1
AT1G35420			alpha/beta-Hydrolases superfam...		Lus10016930 [exp]	2.0	0.9353
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10005863 [exp]	4.0	0.9257
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10042524 [exp]	5.2	0.9338
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Lus10030191 [exp]	5.7	0.9364
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Lus10002626 [exp]	6.2	0.9036
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10041097 [exp]	14.1	0.8452
AT3G27690		LHCB2.3, LHCB2:...	LIGHT-HARVESTING CHLOROPHYLL B...		Lus10001741 [exp]	14.5	0.9070
AT2G39470		PnsL1, PPL2	Photosynthetic NDH subcomplex...		Lus10023436 [exp]	15.8	0.9256
AT4G12800		PSAL	photosystem I subunit l (.1)		Lus10002143 [exp]	19.6	0.9203
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10040901 [exp]	19.8	0.8127

Compare expression of checked genes

Lus10017244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.