Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76080 416 / 3e-147 ATCDSP32, CDSP32 ARABIDOPSIS THALIANA CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD, chloroplastic drought-induced stress protein of 32 kD (.1) AT5G42980 65 / 5e-13 ATTRXH3, ATTRX3, ATH3 THIOREDOXIN H3, thioredoxin H-type 3, thioredoxin 3 (.1) AT1G45145 62 / 7e-12 LIV1, ATTRX5, ATH5 LOCUS OF INSENSITIVITY TO VICTORIN 1, thioredoxin H-type 5 (.1) AT1G19730 61 / 2e-11 ATTRX4, ATH4 thioredoxin H-type 4, Thioredoxin superfamily protein (.1) AT1G59730 59 / 1e-10 ATH7 thioredoxin H-type 7 (.1) AT3G51030 56 / 6e-10 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) AT3G08710 56 / 2e-09 TRXH9, ATH9 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) AT4G26160 57 / 3e-09 ACHT1 atypical CYS HIS rich thioredoxin 1 (.1) AT5G39950 54 / 5e-09 ATTRXH2, ATTRX2, ATH2 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) AT4G29670 54 / 2e-08 ACHT2 atypical CYS HIS rich thioredoxin 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005624 [exp] 559 / 0 AT1G76080 419 / 2e-145 ARABIDOPSIS THALIANA CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD, chloroplastic drought-induced stress protein of 32 kD (.1) Lus10041799 [exp] 66 / 4e-13 AT3G51030 182 / 8e-61 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10028349 [exp] 64 / 1e-12 AT3G51030 179 / 1e-59 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10014277 [exp] 62 / 7e-12 AT3G51030 185 / 4e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10025979 [exp] 60 / 4e-11 AT3G51030 167 / 3e-55 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10007994 [exp] 62 / 2e-10 AT4G29670 268 / 6e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10005258 [exp] 57 / 4e-10 AT5G39950 189 / 4e-63 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) Lus10040554 [exp] 61 / 5e-10 AT4G29670 265 / 7e-87 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10030666 [exp] 56 / 2e-09 AT5G39950 189 / 3e-63 Arabidopsis thioredoxin h2, thioredoxin 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245700 [exp] 419 / 1e-148 AT1G76080 418 / 3e-148 ARABIDOPSIS THALIANA CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD, chloroplastic drought-induced stress protein of 32 kD (.1) Potri.002G016401 [exp] 132 / 9e-39 AT1G76080 138 / 9e-42 ARABIDOPSIS THALIANA CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD, chloroplastic drought-induced stress protein of 32 kD (.1) Potri.007G018000 [exp] 60 / 4e-11 AT3G51030 186 / 2e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.018G066500 [exp] 61 / 1e-10 AT4G29670 253 / 3e-85 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.006G150700 [exp] 59 / 6e-10 AT4G29670 259 / 9e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.017G076700 [exp] 56 / 2e-09 AT5G39950 168 / 7e-55 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) Potri.016G138800 [exp] 53 / 2e-08 AT3G08710 208 / 1e-70 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.005G232700 [exp] 47 / 1e-06 AT3G51030 162 / 5e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.006G110100 [exp] 47 / 1e-06 AT3G08710 178 / 1e-58 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.002G030000 [exp] 47 / 1e-06 AT3G51030 160 / 3e-52 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10017245 pacid=23165758 polypeptide=Lus10017245 locus=Lus10017245.g ID=Lus10017245.BGIv1.0 annot-version=v1.0 ATGGCTACACTCACTAACTCTCTCTCCAAGTCCCCCTACTCTCCACTCCCACAAACCCCAAAACCCAAACCCACCACCAATTTGCCTTTCCTAGCCATCT CTACTAGCAGAACATCATCCGTCGCTAAAACCAGAGTCTCCTCGTTCTATTCCACCGCCGCCGCAGCGAAAAAACGAACTCTGTTCGTCGCAAAAGCAAC GGCCGGTGCTGCTCCGGGAACGTCGGAGAAGACGCCGGCGAAGGATGACGGCGAGAGGGTCCAAAAGATCCACAGCGCGGAGGAGTTGGACGACGCGCTT AAGGCGGCGAAGAACAAGCTGGTAGTGGTGGAATTCGCCGCCAGTACGAGTGTGCAGAGCAATAGAATGTACCCTTTCCTGGTTGAGCTCAGCCGGAACT GCGGCGACGTCGTTTTTCTTTTGGTTATGGGGGATGAGTCCGAGAAGACGAGGGAGCTTTGTCGGAGGGAGAAGATCCAGAAGGTTCCTCACTTCACCTT CTACAAGGGCACGGAGAAGATACACGAGGAGGAAGGGATAGGGCCGGACCAGCTGATGGGGGACGTGCTATACTACGGAGACAACCACAGCGCAGTGGTG CAGCTCCACTGCAGGGAAGACGTGGAGAAGCTGATCGCCGACCATAAGGAGGATCACAAGCTGATCGTGCTGGACGTAGGGCTGAAGCACTGCGGGCCTT GCGTGAAGGTGTATCCGACGGTTCTGAAGCTGTCGAGGCAGATGACTGATACGGTGGCGTTTGCACGGATGAATGGCGACGAGAACGACAGCTGTATGGA TTTCCTGAGGGACATGAAGGTGATAGAAGTGCCGACGTTTTTGTTCATAAGGGACGGGGAGATTAAAGGGAGGTACGTCGGGTCCGGTAAAGGAGAGTTG ATCGGGGAGATTTTGAGATACCAAGGTGTTCGTGTGACCTATTAA
AA sequence Show only first row Show all	>Lus10017245 pacid=23165758 polypeptide=Lus10017245 locus=Lus10017245.g ID=Lus10017245.BGIv1.0 annot-version=v1.0 MATLTNSLSKSPYSPLPQTPKPKPTTNLPFLAISTSRTSSVAKTRVSSFYSTAAAAKKRTLFVAKATAGAAPGTSEKTPAKDDGERVQKIHSAEELDDAL KAAKNKLVVVEFAASTSVQSNRMYPFLVELSRNCGDVVFLLVMGDESEKTRELCRREKIQKVPHFTFYKGTEKIHEEEGIGPDQLMGDVLYYGDNHSAVV QLHCREDVEKLIADHKEDHKLIVLDVGLKHCGPCVKVYPTVLKLSRQMTDTVAFARMNGDENDSCMDFLRDMKVIEVPTFLFIRDGEIKGRYVGSGKGEL IGEILRYQGVRVTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Lus10017245 [exp]	0	1
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Lus10020717 [exp]	3.0	0.9488
AT2G36145			unknown protein		Lus10022687 [exp]	3.2	0.9467
					Lus10018772 [exp]	4.9	0.9442
AT1G54500			Rubredoxin-like superfamily pr...		Lus10015945 [exp]	5.7	0.9438
AT1G76100		PETE1	plastocyanin 1 (.1)		Lus10005628 [exp]	6.5	0.9386
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Lus10023723 [exp]	7.9	0.9339
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10016783 [exp]	8.7	0.9421
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10022479 [exp]	9.4	0.9342
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Lus10027115 [exp]	9.9	0.9371
AT1G15980		PnsB1, NDH48, N...	Photosynthetic NDH subcomplex...		Lus10026086 [exp]	10.5	0.9321

Compare expression of checked genes

Lus10017245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.