Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50410 185 / 1e-54 unknown protein AT1G76070 118 / 7e-30 unknown protein AT1G20310 89 / 8e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005623 [exp] 497 / 2e-175 AT1G76070 116 / 2e-30 unknown protein Lus10007607 [exp] 444 / 1e-153 AT5G50410 231 / 2e-74 unknown protein Lus10034552 [exp] 127 / 1e-33 AT1G76070 66 / 5e-13 unknown protein Lus10021840 [exp] 119 / 4e-32 AT1G76070 59 / 1e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G097500 [exp] 211 / 2e-64 AT5G50410 232 / 2e-76 unknown protein Potri.015G096000 [exp] 208 / 2e-63 AT5G50410 239 / 2e-79 unknown protein Potri.005G245600 [exp] 127 / 7e-33 AT1G76070 97 / 1e-23 unknown protein Potri.002G016500 [exp] 122 / 2e-31 AT1G76070 116 / 4e-31 unknown protein Potri.005G107500 [exp] 49 / 2e-06 AT1G76070 57 / 1e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017246 pacid=23165833 polypeptide=Lus10017246 locus=Lus10017246.g ID=Lus10017246.BGIv1.0 annot-version=v1.0 ATGGCGACGGTGGTGAACACAGCGGAAGAGCAGCAACAACTGCAGGCCGATGGCAGTAGTAGTAATGTGGATAAAAATCCGAACCAGTCTCAAGTATGGT TGACAATGGCGCAAGCTTGGCTGACTGCATTCCCAGACGCCAAGGCTGTGAGTACAGCAGATGTCGAGTCTTGGATCGACTCCAATTTCACGTCTTTACC AGCTGATCTTCAGTCCATGCCTCGATCTGAGATCATCGATCGCCTCCTTTCGATTCAGAACTACATGCGCCCCTCTTCTCAATCTCAGCCGGCGGGAACA GAGGAGAATCAGGTGGACGATACAAGTGATATTCCGAGTTACCGGTTTCAACGAACCGATCAATGGCGGCCGGTTTATTCGTGGTTGGAGACCTTAGATA ACGAAGAAGTGGTTACATCCAACGAAATCTACGACTGGCTGGAATCGAACCCTGGTATCAAAGAAGACTTGCATTCCAGACACCTGGCAGAGCAACCGAG CTTATCGCCTAGTCGAGTGCGAAAGAGTGTTATGGAGATGAAGGAACCATCACCATTACCAAGCAAACAGTTGATGAAGATACCGAAGGATAGCGACTTG TATACAGCAAAACGAAACGAAGCGGTTCAGAAATATGAGATCCGATGTAGGGATCTGACCGGTCCAAATCTCGATCTTCGTTGTGCTAGGAATGAGGCTG CTCATCAAGCCCAAACCTCCAAAATGGAAAAGCTTCAACCCCCCGGCCATAAGTCGAAGAGCAGCAACGGCGGCCATCAGGTATTGAAGTTTCTGAAAGC AGCTTCTTCAATCAACTTCAACAACCCTCCTTTCAGCCCCAGCCGAGATAATAAGCCTTCTTCCGACAATAAATTACACAATTACCCCCACCCCAGATCA GGATTCTCCGGCCCTCTTCTCCCCAGAGTCCCCCGAGCTGTTCGAGGTAAGTTCAAATCCGGCGACGCGCAGCCGGATGAGCCCACTTCTCCCACCATCT CTTGCATCGGCCAAATCAAGAGCAAGAGCAAGAAGAAAACGTCGGTTCCTAATCCTAAGCCGGATACCAAGGAGAATAAGAAGAAGTCGACGGCGAAGGA GAAGAAGAGGGATAAAGATGATGACCCGAAGAAGAAGCATGGGGCCGGGTCGAGTTCGCCCGGAATCTGGAAAATATTCGGGTCGGGTTCTTTTAAATTG GGGCCGTCGTCGGCTCCATCAAGGAGAAAGAGATCTAACAGCACTAGCGACGCTGTCGCCGGATTATATGTCTCCGACAGCGGAGGGACGGCGGCGGAGC AGTCAATGCAGGACGGAGCTCCGGGTTTGAGTCAGATGAGGCGGTTCGCCAGCGGACATCGGCCTGATGGGTTGGGGAATTTCGATTGGACAGCTCATCA GATAGCGCCGGTGGAATCGGAGTGCCGGGATTACAATGACGATGAGGAAGAGGAGAGAGGAAGGTACAGCGATGATGACACGGACGAGGAGGAGGTGATC GTGCCCTTCTCGACGAGGATTGCTGACGTGGAAGGGATGAGTTTGAAGCCAAGGAAAGAAGTGAATCTGTGGAAGAGACGGACCTTGGACCCGCCCCGGC CGCTTCAGCTGGTCGGATCTTCTGCGGTCAGGCCAAATTGA
AA sequence Show only first row Show all	>Lus10017246 pacid=23165833 polypeptide=Lus10017246 locus=Lus10017246.g ID=Lus10017246.BGIv1.0 annot-version=v1.0 MATVVNTAEEQQQLQADGSSSNVDKNPNQSQVWLTMAQAWLTAFPDAKAVSTADVESWIDSNFTSLPADLQSMPRSEIIDRLLSIQNYMRPSSQSQPAGT EENQVDDTSDIPSYRFQRTDQWRPVYSWLETLDNEEVVTSNEIYDWLESNPGIKEDLHSRHLAEQPSLSPSRVRKSVMEMKEPSPLPSKQLMKIPKDSDL YTAKRNEAVQKYEIRCRDLTGPNLDLRCARNEAAHQAQTSKMEKLQPPGHKSKSSNGGHQVLKFLKAASSINFNNPPFSPSRDNKPSSDNKLHNYPHPRS GFSGPLLPRVPRAVRGKFKSGDAQPDEPTSPTISCIGQIKSKSKKKTSVPNPKPDTKENKKKSTAKEKKRDKDDDPKKKHGAGSSSPGIWKIFGSGSFKL GPSSAPSRRKRSNSTSDAVAGLYVSDSGGTAAEQSMQDGAPGLSQMRRFASGHRPDGLGNFDWTAHQIAPVESECRDYNDDEEEERGRYSDDDTDEEEVI VPFSTRIADVEGMSLKPRKEVNLWKRRTLDPPRPLQLVGSSAVRPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50410			unknown protein		Lus10017246 [exp]	0	1
AT1G19400			Erythronate-4-phosphate dehydr...		Lus10026339 [exp]	5.1	0.7613
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10042282 [exp]	6.3	0.8362
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10001672 [exp]	15.6	0.7699
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10003997 [exp]	16.1	0.7214
AT1G16670			Protein kinase superfamily pro...		Lus10042460 [exp]	20.1	0.8100
					Lus10000811 [exp]	23.4	0.7586
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10009386 [exp]	37.7	0.7908
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10031005 [exp]	39.7	0.7211
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039494 [exp]	39.9	0.7386
AT5G40460			unknown protein		Lus10002514 [exp]	49.3	0.7157

Compare expression of checked genes

Lus10017246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.