Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 496 / 9e-164 S-locus lectin protein kinase family protein (.1) AT1G11410 468 / 1e-153 S-locus lectin protein kinase family protein (.1) AT4G21380 423 / 2e-136 ARK3 receptor kinase 3 (.1) AT4G21390 409 / 7e-131 B120 S-locus lectin protein kinase family protein (.1) AT1G65800 396 / 3e-126 ARK2 receptor kinase 2 (.1) AT1G11330 396 / 5e-126 S-locus lectin protein kinase family protein (.1.2) AT1G65790 390 / 5e-124 ARK1 receptor kinase 1 (.1) AT1G61610 390 / 1e-123 S-locus lectin protein kinase family protein (.1) AT1G61380 382 / 2e-121 SD1-29 S-domain-1 29 (.1) AT1G61390 377 / 6e-121 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018402 [exp] 1020 / 0 AT1G11340 691 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 632 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 622 / 0 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 606 / 0 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 588 / 0 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 570 / 0 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10034637 [exp] 567 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030767 [exp] 565 / 0 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030766 [exp] 565 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G035700 [exp] 565 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 563 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 555 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 554 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 553 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 531 / 8e-179 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 499 / 4e-166 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 499 / 6e-166 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 499 / 4e-165 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 451 / 4e-147 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Lus10017247 pacid=23165819 polypeptide=Lus10017247 locus=Lus10017247.g ID=Lus10017247.BGIv1.0 annot-version=v1.0 ATGCCCATGGACCTTCTTCTTATTCTCTCGCCATTTCTTTCTCCCGCCATTTCTTTTCTTCATCATCCTGTTATGCTCTCCCGCCGACGCTTCGAACGAC ACATTAACTCAATCCCAGTCTCTCACCGACGGCGAACTTCTCGTCTCCAATTCCGGAAAATACGGCCTCAGATTCTTCTCCCCCAGTCGCAGCACAAACA GATACCTCGGCATCTGGTTCCTCCCCGTTCCCGAACAGACCGTCGTCTGGGTAGCCAATCGCTACACCCCGATCTCTGCCGTCGACGGCGGCCCTGGCAC CGGAATCCTTACATTCGACTCCACTGGGAACATCATACTCCGCGATGGAAACGTTTCAATCTGGTCGACCAACACGAAACGATTCGATCCTATTCGATCA GCCAAGCTGCTCGATTCGGGGAACTTCGTGCTGTTATCATCGGACAACTGGACGATTCTATGGCAGAGCATCGATTACCCGACGAACACTCTGTTACCAG GAGCGAATTGGGGCTGGACAAGCGAACAGGGTTGGACCGATTTCTAACCTCGTGGAGATCTGAGTCCGATCCGGGAACCTGGTCATTCACGTTCCGGGTC GAACCGAGCGGGTCGCCGCAGTTCATCCTCTACAAGAACGGAACTCGTTACTGGAGGAGCAATCCATGGCCGTGGGGCAGCTACGGGGAGCTATTCGAGG TCGATTTTGTAAATAACGAAGATGAAGCTTCCTTCACCATCACGCTGAACAACGATTCGGTTCTGCTCTGGAATACGGTGTACTATACCGGAGTCAACCG GCAGCAAATTTGGCGGGAAGGCTATGGCGGGTGGAAAGAGTACTGGTCTTCGCCGACTCAAAAATGCGATCTTTACGGAAGGTGCGGGAAGAATGGACTC TGTGATCCGAGCAATGTTAATAGTTTTGAGTGTTCTTGCTTGCCAGGGTATGTGATTAGGTCGCCCAGGAGCTGGCATTTATTCGATGGATCCGGTGGGT GTGTCAGGAAGAAATCCGATTCGGATTCGGACTGTGGGGAAGGAGACGGGTTTGTGAGGGTGCAGAAGGTGAAGGCTCCGGATAGTTCGAAGGCTATTTG GCTCGAGAAGAGCGGGTGGTGTGAAGTTGAGTGTAGAAAGAACTGTTCTTGCTCTGCTTATGCTGAGGTTGATTCTGGCAAGAAGAAAGGTTGCTTGCTC TGGTTTGGGGATCTTGTTGATACGGTTTATTACCCTGGTAGTGCTCAGGATCTGTATGTTCGAGTCGATGCTGCCGAATTCGGGATGTTCTCACAATTTC GAGTTGCCGATGCAGCTAATTATCGAGATGGATCGAACAAGTTTCTCGAGTTGAAGCTGAAACTGAGCATTGTGCTGCCCTCCATTGCTGCATTATGGCT TGTTCTTATCCTGTTAGGCTTCTTCTGGCTAAGGAGGTGGCGAAGCAGGACAGTGAAGAAAAGAAGGATCAGAGATTTGTTCCCCCCGAACCGTAGTTCG AACCGGTTCAAAAACAATGGGATGTCGAGTGAGGAGATGGGAGGGACCTCAGTCTACCCAGAGCTGCCTTTCTTTAGTCTCAACACTATCCGGGCTGCTA CCGAAGATTTTGCCCCTGCTAACCAGCTCGGATGGGGAGGGTTCGGGTCAGTGTACAAGGGGAGGCTGCCAAATGGACCACAGGTTGCTGTGAAGCGGCT GAGCGAAAATTCGAGGCAAGGGCTCGAGCAGTTCAGGAACGAAGTACTACTTATCGCGAAGCTGCAACATCGGGATCTCGTTAAGCTCCATGGATGCTGC GTTGAAGAAGAAGAACAAATGCTGATCTATGAGTACTTGCCTAACAGAAGCCTAGACCTTTTTCTGTTCCATCAATCAGGGGGAGCTGTGTTGGACTGGA CGAGGCGGTTCAATATCATTTTCGGTATTGCGCGTGGGATCTTGTACCTTCATGAGGATTCGAGGTTCAGGATAATCCACAGAGAGTTGAAAACCAGCAA TATTCTTCTCAACGCTGAGCAGAACCCGAAAATCTCTGATTTCGGGATGGCTACAGTGCTCGAGGCCGGCCAAGTTCATGGGAAGACATCTACCGTTGGA GGAACATACGGTTACATGTCACCAAAATATGCAGTGTTTGGAAGATTCTCCGAAAAGTCTGACGTGTTCAGCTTCGGTGTCATTCTGTTGGAGACGGTTA CAGGCAAGAAGATCAGTACACTCTAA
AA sequence Show only first row Show all	>Lus10017247 pacid=23165819 polypeptide=Lus10017247 locus=Lus10017247.g ID=Lus10017247.BGIv1.0 annot-version=v1.0 MPMDLLLILSPFLSPAISFLHHPVMLSRRRFERHINSIPVSHRRRTSRLQFRKIRPQILLPQSQHKQIPRHLVPPRSRTDRRLGSQSLHPDLCRRRRPWH RNPYIRLHWEHHTPRWKRFNLVDQHETIRSYSISQAARFGELRAVIIGQLDDSMAEHRLPDEHSVTRSELGLDKRTGLDRFLTSWRSESDPGTWSFTFRV EPSGSPQFILYKNGTRYWRSNPWPWGSYGELFEVDFVNNEDEASFTITLNNDSVLLWNTVYYTGVNRQQIWREGYGGWKEYWSSPTQKCDLYGRCGKNGL CDPSNVNSFECSCLPGYVIRSPRSWHLFDGSGGCVRKKSDSDSDCGEGDGFVRVQKVKAPDSSKAIWLEKSGWCEVECRKNCSCSAYAEVDSGKKKGCLL WFGDLVDTVYYPGSAQDLYVRVDAAEFGMFSQFRVADAANYRDGSNKFLELKLKLSIVLPSIAALWLVLILLGFFWLRRWRSRTVKKRRIRDLFPPNRSS NRFKNNGMSSEEMGGTSVYPELPFFSLNTIRAATEDFAPANQLGWGGFGSVYKGRLPNGPQVAVKRLSENSRQGLEQFRNEVLLIAKLQHRDLVKLHGCC VEEEEQMLIYEYLPNRSLDLFLFHQSGGAVLDWTRRFNIIFGIARGILYLHEDSRFRIIHRELKTSNILLNAEQNPKISDFGMATVLEAGQVHGKTSTVG GTYGYMSPKYAVFGRFSEKSDVFSFGVILLETVTGKKISTL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10017247 [exp]	0	1
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007632 [exp]	7.9	0.6917
AT5G35390			Leucine-rich repeat protein ki...		Lus10017144 [exp]	9.2	0.6624
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10020763 [exp]	14.7	0.6586
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018381 [exp]	14.9	0.6667
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10018828 [exp]	17.9	0.6733
AT2G19130			S-locus lectin protein kinase ...		Lus10032944 [exp]	18.8	0.6628
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10042388 [exp]	21.0	0.6513
AT4G37420			Domain of unknown function (DU...		Lus10030740 [exp]	37.0	0.6619
AT3G02645			Plant protein of unknown funct...		Lus10015084 [exp]	37.5	0.6255
AT2G39650			Protein of unknown function (D...		Lus10040293 [exp]	39.4	0.6580

Compare expression of checked genes

Lus10017247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.