Plant FIBer expression Database

Lus10017248 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76060 157 / 2e-49 EMB1793 EMBRYO DEFECTIVE 1793, LYR family of Fe/S cluster biogenesis protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005621
[exp]
258 / 2e-89 AT1G76060 202 / 2e-67 EMBRYO DEFECTIVE 1793, LYR family of Fe/S cluster biogenesis protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G016600
[exp]
172 / 1e-55 AT1G76060 196 / 3e-65 EMBRYO DEFECTIVE 1793, LYR family of Fe/S cluster biogenesis protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0491 LYR-like PF05347 Complex1_LYR Complex 1 protein (LYR family)
Representative CDS sequence
>Lus10017248 pacid=23165799 polypeptide=Lus10017248 locus=Lus10017248.g ID=Lus10017248.BGIv1.0 annot-version=v1.0
ATGACGACGACAATCAAGCTCCAGAAATGGAAGAATCTAGCGATCTCGGTCAACCATACAGTACGGAACAGCAGGGCTCTTAACTGGCGGCATATACACG
AAGGTCCGGACACATTGGAGGAGTTGTTCGAGAGGCATGTGGCGAAGAACAAAGAGACTACGTCGTCGCTAGACGAAGAAGAGGAAGAGCTACTGAACCG
GCGAAGGCTGACGAGCACGCGGCGAGAGGCGCTGCATCTGTACAGGGACATCTTGAGGGCGACGCGGTTCTTCGTGTGGCCAGACACTCGCGGGGTGATG
TGGAGGGACGTGCTAAGGGAGAACGCAAGGAAGGAGTTCGACGAAGCTCGGTTCGAGAAGGATCCGGAGATCGTGACGCGGCTTCTCATCAATGGCCGAG
ACGCCGTGGAATTTGCTCTGGAGAAGCTCGCCGAGAAGCAGAGGCTGCAAATTGAGAAAGAGCGCGGCGGAAATGGAGGATTCGGCCGCTGA
AA sequence
>Lus10017248 pacid=23165799 polypeptide=Lus10017248 locus=Lus10017248.g ID=Lus10017248.BGIv1.0 annot-version=v1.0
MTTTIKLQKWKNLAISVNHTVRNSRALNWRHIHEGPDTLEELFERHVAKNKETTSSLDEEEEELLNRRRLTSTRREALHLYRDILRATRFFVWPDTRGVM
WRDVLRENARKEFDEARFEKDPEIVTRLLINGRDAVEFALEKLAEKQRLQIEKERGGNGGFGR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G76060 EMB1793 EMBRYO DEFECTIVE 1793, LYR fam... Lus10017248
[exp]
0 1
AT5G03370 acylphosphatase family (.1) Lus10026533
[exp]
5.3 0.8168
AT2G35900 unknown protein Lus10021249
[exp]
8.4 0.8055
AT1G76060 EMB1793 EMBRYO DEFECTIVE 1793, LYR fam... Lus10005621
[exp]
12.6 0.8035
AT3G03773 HSP20-like chaperones superfam... Lus10024119
[exp]
15.3 0.7511
AT2G36930 C2H2ZnF zinc finger (C2H2 type) family... Lus10023928
[exp]
17.4 0.7570
AT3G58810 ATMTPA2, MTP3, ... ARABIDOPSIS METAL TOLERANCE PR... Lus10002674
[exp]
19.2 0.7556
AT1G02020 nitroreductase family protein ... Lus10030289
[exp]
19.4 0.7404
AT1G74250 DNAJ heat shock N-terminal dom... Lus10017846
[exp]
20.1 0.7197
AT5G41685 Mitochondrial outer membrane t... Lus10001641
[exp]
20.4 0.7137
AT2G21290 unknown protein Lus10018053
[exp]
22.6 0.7178

Lus10017248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.