Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20270 404 / 3e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G66060 344 / 1e-118 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G17720 318 / 2e-108 P4H5 prolyl 4-hydroxylase 5, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G35810 307 / 6e-104 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G28480 202 / 1e-62 Oxoglutarate/iron-dependent oxygenase (.1.2) AT4G35820 197 / 4e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G18900 197 / 6e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G06300 195 / 5e-60 P4H2, AT-P4H-2 prolyl 4-hydroxylase 2, P4H isoform 2 (.1) AT3G28490 194 / 1e-59 Oxoglutarate/iron-dependent oxygenase (.1) AT2G43080 181 / 1e-54 AT-P4H-1 P4H isoform 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005620 [exp] 567 / 0 AT1G20270 465 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10028404 [exp] 350 / 1e-120 AT5G66060 486 / 8e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10041857 [exp] 350 / 2e-120 AT5G66060 488 / 2e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10032183 [exp] 216 / 6e-68 AT3G28480 434 / 3e-154 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10012014 [exp] 201 / 5e-62 AT5G18900 448 / 2e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016271 [exp] 199 / 1e-61 AT5G18900 444 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014502 [exp] 196 / 3e-60 AT3G28480 398 / 4e-140 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10031048 [exp] 180 / 1e-54 AT2G43080 406 / 7e-145 P4H isoform 1 (.1) Lus10035434 [exp] 161 / 2e-45 AT2G43080 365 / 4e-125 P4H isoform 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245300 [exp] 426 / 8e-151 AT1G20270 483 / 3e-174 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G108000 [exp] 336 / 3e-115 AT5G66060 405 / 1e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.007G060800 [exp] 322 / 3e-109 AT5G66060 349 / 6e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.002G016700 [exp] 206 / 9e-66 AT1G20270 229 / 5e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G075100 [exp] 206 / 3e-64 AT3G28480 436 / 3e-155 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.017G075300 [exp] 202 / 3e-63 AT3G28480 345 / 5e-120 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.008G197700 [exp] 199 / 1e-61 AT5G18900 448 / 3e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G232100 [exp] 185 / 2e-56 AT2G43080 456 / 4e-164 P4H isoform 1 (.1) Potri.009G091000 [exp] 141 / 2e-39 AT4G33910 431 / 9e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G296800 [exp] 139 / 1e-38 AT4G33910 441 / 6e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10017249 pacid=23165840 polypeptide=Lus10017249 locus=Lus10017249.g ID=Lus10017249.BGIv1.0 annot-version=v1.0 ATGGCGAAACTGAGACACTCGCGATTGCATGCGAAGAAATGGTCGTCATTCACTCTGGTTCTCTCCATGCTGTTCATGCTCTCGGTTGTCATCCTGATGC TTCTAGGCTTGGGGATTTTCTCTCTTCCTATGAGCACTGACGATTCCACTCAAAACGATTTGTCTGCTTCCTATCGCCGCATGGCTATCGAACGAGATGG CCACGGGCTAGGGCAGCGAGGAGAGCAGTGGACAGAGATTGTTTCGTGGGAGCCTAGAGCTTTTCTGTATCACAATTTCCTGCTGTTTCTGTTGTACATG TTAATTACTTGCGAGGCGAAAGTATTTTCATTTGTATTAACGATGCTAGTTGCTGGGCTCAAATCTGGACAGTCCAAAGAAGAATGCGAGTACCTAATCT CCCTTGCGAAGCCTCACATGACGAAATCAACCGTGGTGGACAGTACAACAGGGAAAAGCAAAGATAGCAGGGTGCGTACAAGCTCTGGCATGTTTCTCAG GAGAGGACAAGATAAAATCATCAGAAGCATTGAGAAGAGGATCGCAGATTTTTCTTTTATTCCTGCAGACCATGGTGAAGGACTTCAAATTCTCCACTAT GAGATTGGTCAGAAGTACGAGCCTCATTTTGATTATTTCCTTGATGAATTCAACACCAAGAATGGCGGCCAGCGAACAGCTACTTTGCTAATGTATTTGT CAGACGTGGAAGAAGGCGGCGAGACTGTATTTCCTAATGCCAAGGCGAATGCCAGTTCGGTACCATGGTGGAATGAGCTGTCCGAATGCGGTAAAAAGGG TCTTTCCCTGAAACCAAAGATGGGGAATGCTTTGTTATTTTGGAGCACAAGACCAGATGCGTCGTTAGATCCAACTAGTTTACATGGTATTGGTGTTAGA AAAGAAAACTCCAACCCTAAACCGATGGTTGAAACTTCAAAAGCATTATCCCGCCGCCATGGTTTTCTCAAATGTTATGTTACTGCGCTTGTTTCAGGTA GTTGCGCCGTGATTACAGGGAACAAATGGTCAGCTACAAAATGGATGCATCTCGGAGAGTACAAAGTCAGCTAA
AA sequence Show only first row Show all	>Lus10017249 pacid=23165840 polypeptide=Lus10017249 locus=Lus10017249.g ID=Lus10017249.BGIv1.0 annot-version=v1.0 MAKLRHSRLHAKKWSSFTLVLSMLFMLSVVILMLLGLGIFSLPMSTDDSTQNDLSASYRRMAIERDGHGLGQRGEQWTEIVSWEPRAFLYHNFLLFLLYM LITCEAKVFSFVLTMLVAGLKSGQSKEECEYLISLAKPHMTKSTVVDSTTGKSKDSRVRTSSGMFLRRGQDKIIRSIEKRIADFSFIPADHGEGLQILHY EIGQKYEPHFDYFLDEFNTKNGGQRTATLLMYLSDVEEGGETVFPNAKANASSVPWWNELSECGKKGLSLKPKMGNALLFWSTRPDASLDPTSLHGIGVR KENSNPKPMVETSKALSRRHGFLKCYVTALVSGSCAVITGNKWSATKWMHLGEYKVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10017249 [exp]	0	1
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10005620 [exp]	4.0	0.8925
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10008643 [exp]	4.6	0.9293
AT3G55640			Mitochondrial substrate carrie...		Lus10040257 [exp]	4.9	0.8765
AT4G32060			calcium-binding EF hand family...		Lus10005346 [exp]	5.2	0.9216
AT4G10265			Wound-responsive family protei...		Lus10033731 [exp]	5.3	0.9116
AT5G39890			Protein of unknown function (D...		Lus10013620 [exp]	6.9	0.9224
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10035582 [exp]	9.8	0.8972
AT3G08650			ZIP metal ion transporter fami...		Lus10003243 [exp]	13.4	0.8986
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10025252 [exp]	14.1	0.8856
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020773 [exp]	14.3	0.8607

Compare expression of checked genes

Lus10017249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.