Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76050 486 / 3e-170 Pseudouridine synthase family protein (.1.2) AT3G52260 69 / 2e-12 Pseudouridine synthase family protein (.1.2.3) AT3G19440 68 / 4e-12 Pseudouridine synthase family protein (.1) AT5G51140 64 / 1e-10 Pseudouridine synthase family protein (.1.2) AT1G78910 57 / 2e-08 Pseudouridine synthase family protein (.1) AT1G56345 56 / 3e-08 Pseudouridine synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005619 [exp] 621 / 0 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10023503 [exp] 87 / 1e-18 AT3G52260 498 / 6e-178 Pseudouridine synthase family protein (.1.2.3) Lus10002811 [exp] 83 / 1e-16 AT3G19440 445 / 1e-153 Pseudouridine synthase family protein (.1) Lus10040385 [exp] 79 / 1e-15 AT3G52260 488 / 2e-173 Pseudouridine synthase family protein (.1.2.3) Lus10027863 [exp] 76 / 2e-14 AT3G19440 424 / 1e-145 Pseudouridine synthase family protein (.1) Lus10029848 [exp] 66 / 2e-11 AT1G56345 358 / 7e-124 Pseudouridine synthase family protein (.1) Lus10022437 [exp] 64 / 1e-10 AT5G51140 505 / 1e-177 Pseudouridine synthase family protein (.1.2) Lus10034804 [exp] 50 / 3e-06 AT1G78910 655 / 0.0 Pseudouridine synthase family protein (.1) Lus10033350 [exp] 50 / 3e-06 AT1G78910 658 / 0.0 Pseudouridine synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G016800 [exp] 524 / 0 AT1G76050 504 / 1e-178 Pseudouridine synthase family protein (.1.2) Potri.008G042000 [exp] 82 / 8e-17 AT3G52260 494 / 5e-176 Pseudouridine synthase family protein (.1.2.3) Potri.009G095700 [exp] 70 / 1e-12 AT3G19440 483 / 2e-168 Pseudouridine synthase family protein (.1) Potri.015G101300 [exp] 61 / 6e-10 AT5G51140 512 / 0.0 Pseudouridine synthase family protein (.1.2) Potri.013G009300 [exp] 59 / 3e-09 AT1G56345 333 / 9e-114 Pseudouridine synthase family protein (.1) Potri.004G228200 [exp] 56 / 5e-08 AT1G78910 648 / 0.0 Pseudouridine synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0492 [flax] [poplar] S4 PF01479 [flax] [poplar] S4 S4 domain CL0649 [flax] [poplar] PseudoU_synth PF00849 [flax] [poplar] PseudoU_synth_2 RNA pseudouridylate synthase
Representative CDS sequence Show only first row Show all	>Lus10017250 pacid=23165798 polypeptide=Lus10017250 locus=Lus10017250.g ID=Lus10017250.BGIv1.0 annot-version=v1.0 ATGTTCGTTTCCCCGTGTTCTGCTGTTCTCCAATCCTCTTCGCCATTTCTCTCTTTCACCTTCAAGCGGAACCCAAGGCCATCACCTTCCCAGATTCTCT TCAGATTTCTCTCCGTTCGTTGTTCTCCATCTTCCTCCGTCAGTGTCGGTGAGAATGGAAGTCCTCTGAGCAATTACGCCGGCGTCAGACTGGAGGAGAC TGTAGAGACTGTTTCCGGCAAGCTAAGGCTCGATTCTTGGATATCTTCTCGGATTTCAGGCATCAGTAGAGCTCGCGTTCAGTCCAGTATCAAAACAGGT CTCGTCATCGTCAATGGCAGAGTCGTCGATAAGACTTCGTATAGCGTCAAAGCTGGAGATGAGATCCATTGCACGATCTCGGAGCTCCAGCCATTGAGAG CTCAGCCGGAAAACATACCTCTAGATATAGTTTACGAAGATGACCACGTTCTGGTTGTTAATAAACCAGCAGATATGGTTGTTCATCCAGCACCTGGAAA TCCTGCAGGGACACTTGTAAATGGCATTCTTCACCATTGCAGTCTTCCAGGACTTGCGTCTTCCGGTCATGAACTTATCAAAGATTCAGAGGATGTTTCA GATGATGAAGATTTAGTTTCTAGCTCTTATGCTGCGTCAGTTCGTCCTGGAATAGTGCACAGATTGGATAAAGGCACTAGCGGATTGCTTGTAGTTGCTA AGGATGAACATTCGCATGCTCACTTGTCCAAACAATTCAAACTACGTACTATCCGAAGAGTGTACTTAAGTCTTACTTCTGGTGTCCCTTCGCCAGTTGC TGGACGCATAGACATCCCCATCGGCCGTGATGTCCATAACAGGGTTCGTATGACTGCTGTAACTGGACCAATGGCTAGAGGGAAAGCCCGTCATGCTGCT AGTAGGTACAAGGTCATTGAAATTCTTGCTGGTGGTGGTTCGGCTTTGGTTGAATGGAAATTAGAAACTGGGCGTACTCACCAGATTCGTGCACATGCAA AGTATATTGGATGTCCATTGCTCGGGGATGAAGTCTATGGAGGGACCAAAAACATGGCTTTATCCCTGCTTCAACCCAGAGTAGCACGAAGCCATCACGA TCAACTTTTGGAGTTGCTTTCGGGATTAGATAGACCTTCTTTGCATGCTTTCTCTCTGGGGTTTGAGCATCCTTGCACGAAGAAAGAAGTACATTTCTCA TGCCCTCCTCCTCCTGATTTCGACAAGATCCTAAGGCAGCTCCGTAAAATGACTACAGAGAAGGTATGTTATGTGCAACTCCCCGATGCTGTGGCTGTTT CAGTTTTATACTTTCCTGTGCTTGTACCAGTCCATGGGTATCAGATTCTGTTTTATACTTTCTGCCTTTCTGGTGACCTCATTTGTTGTGTTGAGTTGAG CCATTCTATTCTGTTCCGTGTGTTATGA
AA sequence Show only first row Show all	>Lus10017250 pacid=23165798 polypeptide=Lus10017250 locus=Lus10017250.g ID=Lus10017250.BGIv1.0 annot-version=v1.0 MFVSPCSAVLQSSSPFLSFTFKRNPRPSPSQILFRFLSVRCSPSSSVSVGENGSPLSNYAGVRLEETVETVSGKLRLDSWISSRISGISRARVQSSIKTG LVIVNGRVVDKTSYSVKAGDEIHCTISELQPLRAQPENIPLDIVYEDDHVLVVNKPADMVVHPAPGNPAGTLVNGILHHCSLPGLASSGHELIKDSEDVS DDEDLVSSSYAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSKQFKLRTIRRVYLSLTSGVPSPVAGRIDIPIGRDVHNRVRMTAVTGPMARGKARHAA SRYKVIEILAGGGSALVEWKLETGRTHQIRAHAKYIGCPLLGDEVYGGTKNMALSLLQPRVARSHHDQLLELLSGLDRPSLHAFSLGFEHPCTKKEVHFS CPPPPDFDKILRQLRKMTTEKVCYVQLPDAVAVSVLYFPVLVPVHGYQILFYTFCLSGDLICCVELSHSILFRVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76050			Pseudouridine synthase family ...		Lus10017250 [exp]	0	1
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Lus10035091 [exp]	2.8	0.9059
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10008475 [exp]	3.0	0.9311
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043198 [exp]	3.5	0.9136
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10001060 [exp]	4.5	0.9264
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10027533 [exp]	5.5	0.8987
AT1G06900			Insulinase (Peptidase family M...		Lus10008604 [exp]	6.0	0.8970
AT5G14460			Pseudouridine synthase family ...		Lus10003661 [exp]	6.1	0.8751
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10030285 [exp]	8.2	0.8924
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10003599 [exp]	8.8	0.9062
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008040 [exp]	8.9	0.8895

Compare expression of checked genes

Lus10017250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.