Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76040 761 / 0 CPK29 calcium-dependent protein kinase 29 (.1.2) AT1G50700 705 / 0 CPK33 calcium-dependent protein kinase 33 (.1) AT3G20410 698 / 0 CPK9 calmodulin-domain protein kinase 9 (.1) AT4G21940 690 / 0 CPK15 calcium-dependent protein kinase 15 (.1.2) AT4G04720 689 / 0 CPK21 calcium-dependent protein kinase 21 (.1) AT1G61950 657 / 0 CPK19 calcium-dependent protein kinase 19 (.1) AT5G19360 647 / 0 CPK34 calcium-dependent protein kinase 34 (.1) AT5G12180 647 / 0 CPK17 calcium-dependent protein kinase 17 (.1) AT4G23650 628 / 0 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) AT4G04740 593 / 0 CPK23, ATCPK23 calcium-dependent protein kinase 23 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005619 [exp] 874 / 0 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10021531 [exp] 720 / 0 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10040071 [exp] 717 / 0 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10032640 [exp] 695 / 0 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10006777 [exp] 666 / 0 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10020046 [exp] 663 / 0 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10038460 [exp] 645 / 0 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10017537 [exp] 640 / 0 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Lus10000889 [exp] 637 / 0 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G017000 [exp] 786 / 0 AT1G76040 758 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.005G245000 [exp] 771 / 0 AT1G76040 729 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.004G015500 [exp] 711 / 0 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.011G003400 [exp] 703 / 0 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.009G069200 [exp] 652 / 0 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.001G097400 [exp] 640 / 0 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.001G274700 [exp] 640 / 0 AT5G12180 909 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.003G134000 [exp] 639 / 0 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.004G207300 [exp] 590 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.009G168600 [exp] 584 / 0 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10017251 pacid=23165860 polypeptide=Lus10017251 locus=Lus10017251.g ID=Lus10017251.BGIv1.0 annot-version=v1.0 ATGGGACTCTGTTTCACAAGAACCAAGTCCCATGACATCCCAATATCCTCTTCTTCTTCAGACTCCCCTCCTCCAACCATCCACAAACCAAAACCGAAAC CAACTCAAAACCCATACTACCCATCATCATCCCAACCTAGAACTCCATCTTCCTCCACACCTTCCCAAATTGGCCCCATCCTGGGCAAACCATACGTCGA CGTTTCGTCCATATACGACCTCGCCAAAGAACTCGGGAGGGGCCAATTCGGAATAACCTATCTGTGTACCGAGAAGTCCACGGGAAGAAACTACGCCTGC AAATCGATATCGAGGAGGAAGCTGGTGACCAAGAAGGACATTGAAGACGTGAGGAGAGAGATCCTGATACTGCAGCACTTGACTGGGCAACCCAACATCG TGGAATTCAAAGGTGCTTACGAAGATAAAGATAATTTGCACCTGGTTATGGAGGTGTGCTCTGGCGGGGAGCTGTTTGATCGGATAATAGCTAAAGGGAG TTACTCGGAGAAAGAGGCTGCTAAGGTTATTAGGCAGATAGTGAATGTGGTGCACGTTTGCCATTTCATGGGCGTGATGCATAGAGATTTGAAGCCTGAG AATTTCTTGCTCGCTAGTAAAGATGACGATGCTCCTATCAAGGCTACTGATTTCGGGCTCTCTGTTTTCATCGAAGCAGGGAAAGTATACAAAGAGCTAG TTGGGAGTGCATACTACGTTGCGCCGGAGGTGTTGAAAAGAAGCTATGGGAAGGAGATAGATGTGTGGAGTGCTGGAGTTATCTTGTACATTCTCCTATC CGGCGTTCCTCCATTTTGGGCTGAGAGTGAAAGAGGAATATTCAATGCGATTTTAGAAACGAACCTGGATCTGCAGACCTTGCCATGGCCGAATATTTCG GAGTCTGCTAAGGATCTAGTCAGGAAGATGTTAGCTAGAGACCCTAGGAAAAGGATTACTGCTGCACAGGCTCTCGAACATCCATGGTTGAAGGAAGGTG GAAATGCGTCTGATAAACCAATTGACAGTGCGGTCTTGATAAGGATGAAGCAGCTTAGAGCTATGAACAAGATGAAGAAACTTGCTTTGAAGGTAATAGC AGAGAACCTTCCAGAGGAAGAAATCAAAGGGTTGAAACAGATGTTCAAGAACATGGACACTGATGGAAGTGGAACTATTACGTATGACGAACTCAAAGCT GGTTTGCACAGGCTAGGTTCTAAGCTCTCTGAAGCTGAGATCAGGCAGTTGATGGATGCGGCTGATGTAGACAAGAATGGGACGATAGACTACGTCGAGT TCATAACAGCAACAATGCACAGGCATAGGCTTGAGAAGGAAGAGCACTTATTCCAAGCTTTCCAGTACTTTGATAAGGACAACAGTGGGTTTATCACAAG AGATGAGTTGAGACATGCCATGTCTCAGTATGGCATGGGCGATGAAGCAACCATTGATGAGGTCATAGACGATGTCGACACCGATAAGGATGGAAGAATT AACTATGAGGAATTTGTGGCCATGATGAGAAAGGGAAATGCAGGATCCTGA
AA sequence Show only first row Show all	>Lus10017251 pacid=23165860 polypeptide=Lus10017251 locus=Lus10017251.g ID=Lus10017251.BGIv1.0 annot-version=v1.0 MGLCFTRTKSHDIPISSSSSDSPPPTIHKPKPKPTQNPYYPSSSQPRTPSSSTPSQIGPILGKPYVDVSSIYDLAKELGRGQFGITYLCTEKSTGRNYAC KSISRRKLVTKKDIEDVRREILILQHLTGQPNIVEFKGAYEDKDNLHLVMEVCSGGELFDRIIAKGSYSEKEAAKVIRQIVNVVHVCHFMGVMHRDLKPE NFLLASKDDDAPIKATDFGLSVFIEAGKVYKELVGSAYYVAPEVLKRSYGKEIDVWSAGVILYILLSGVPPFWAESERGIFNAILETNLDLQTLPWPNIS ESAKDLVRKMLARDPRKRITAAQALEHPWLKEGGNASDKPIDSAVLIRMKQLRAMNKMKKLALKVIAENLPEEEIKGLKQMFKNMDTDGSGTITYDELKA GLHRLGSKLSEAEIRQLMDAADVDKNGTIDYVEFITATMHRHRLEKEEHLFQAFQYFDKDNSGFITRDELRHAMSQYGMGDEATIDEVIDDVDTDKDGRI NYEEFVAMMRKGNAGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76040		CPK29	calcium-dependent protein kina...		Lus10017251 [exp]	0	1
AT5G18970			AWPM-19-like family protein (....		Lus10001116 [exp]	3.3	0.9429
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027846 [exp]	4.9	0.9340
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10010279 [exp]	5.5	0.9367
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10033405 [exp]	6.9	0.9375
AT4G23410		TET5	tetraspanin5 (.1)		Lus10041411 [exp]	7.5	0.9034
AT5G64240		AtMCP1a, ATMC3	metacaspase 1a, metacaspase 3 ...		Lus10035630 [exp]	9.5	0.9290
					Lus10033952 [exp]	10.8	0.9155
AT5G19875			unknown protein		Lus10034527 [exp]	12.2	0.9010
					Lus10025868 [exp]	13.0	0.9292
AT3G45070			P-loop containing nucleoside t...		Lus10003070 [exp]	13.0	0.9243

Compare expression of checked genes

Lus10017251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.