Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60420 300 / 2e-96 DC1 domain-containing protein (.1) AT4G31240 265 / 5e-85 protein kinase C-like zinc finger protein (.1.2) AT3G45840 44 / 0.0002 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37780 43 / 0.0002 Cysteine/Histidine-rich C1 domain family protein (.1) AT3G01680 42 / 0.0007 SEOR1, SEOb Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005618 [exp] 686 / 0 AT1G60420 300 / 2e-96 DC1 domain-containing protein (.1) Lus10013017 [exp] 293 / 2e-93 AT1G60420 624 / 0.0 DC1 domain-containing protein (.1) Lus10029148 [exp] 62 / 2e-11 AT1G60420 121 / 5e-33 DC1 domain-containing protein (.1) Lus10000548 [exp] 49 / 7e-06 AT3G01680 677 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022305 [exp] 49 / 7e-06 AT3G01680 744 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10034567 [exp] 49 / 8e-06 AT3G01680 590 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10021828 [exp] 47 / 2e-05 AT3G01680 592 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G244700 [exp] 563 / 0 AT1G60420 298 / 8e-96 DC1 domain-containing protein (.1) Potri.002G017200 [exp] 556 / 0 AT1G60420 303 / 3e-97 DC1 domain-containing protein (.1) Potri.010G059700 [exp] 294 / 5e-94 AT1G60420 680 / 0.0 DC1 domain-containing protein (.1) Potri.010G060200 [exp] 292 / 3e-93 AT1G60420 679 / 0.0 DC1 domain-containing protein (.1) Potri.010G059401 [exp] 290 / 2e-92 AT1G60420 667 / 0.0 DC1 domain-containing protein (.1) Potri.010G059550 [exp] 289 / 5e-92 AT1G60420 658 / 0.0 DC1 domain-containing protein (.1) Potri.010G059600 [exp] 287 / 2e-91 AT1G60420 666 / 0.0 DC1 domain-containing protein (.1) Potri.010G059900 [exp] 285 / 3e-90 AT1G60420 652 / 0.0 DC1 domain-containing protein (.1) Potri.010G060300 [exp] 277 / 2e-88 AT1G60420 560 / 0.0 DC1 domain-containing protein (.1) Potri.010G060100 [exp] 272 / 2e-85 AT1G60420 654 / 0.0 DC1 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00578 [flax] [poplar] AhpC-TSA AhpC/TSA family
Representative CDS sequence Show only first row Show all	>Lus10017252 pacid=23165806 polypeptide=Lus10017252 locus=Lus10017252.g ID=Lus10017252.BGIv1.0 annot-version=v1.0 ATGAGGATGGGTACTGTCGACGACCAAGACCGCCTTAACGTCGCTATTCAAGCCACCGCCGCTGCCCAAGCTAACGGCGGCGGCGACCCGGACTGCTACC CGTCACCAACTACATCAAGATTAGCTTCTCTCCTCGGTTCCCAAACTCGTGATTACCTCCTCTCCAGAGATGGTGCTCAGGTGAAAATTTCCGATCTAGA AGGGAAAGTAGTGGGGCTATACTTCTCAGCCAACTGGTACCCACCCTGTCGAAACTTCAACCAATTCCTCATTGGCGCCTACCAGCAGCTCAAGACCAAT GGCGGGTCCAATTTTGAGATCGTGTTCGTCTCCTGCGACGAGGACTCGCACGCGTTCCACAGCTACCGTGCCGGAATGCCCTGGCTCAGCGTCCCGTTCT CTGACCTGGAGGCCAAGAAATCGCTGACTTCCAAGTTCGAGATCGAGGGGATTCCTTGCTTGGTTATCCTCCAGCCCGGCAGTACTGAGGGTAAATATGT CGAGTCGGGGGTACGAAACGGGGTTGAGTTGATGTACCGGTTCGGGGTGAATGCGTTTCCGTTCACGAAACTTAGGCTGGACGAGCTGCGAAGGGAGGAG AAGGAGAAGCATGATAGCCAGACGCTTTTTAATTTGCTGACTAATCACGACAGAGACTATGTTCTGGGCCACCCTGCATCTAAACAGGTACGGGTTGGAT CCCTAGTAGGGAAAACTATTGGGCTCTACTTTTCAGCACAATGGTGTCTCCCTTGCGAGAAGTTCACTCCCAAGCTCATCGAAATCTACCACAAAATCAA GCAATCCCTGACCGCTAACGAGAGCAACAACGAACTCGACTTTGAGATTGTGTTTGTGTCAAACGATCGGGACCAGGACAGGTTCGAGTCCTACTTCGCG CAAATGCCGTGGCTGGCATTACCATTTGGGGACACGAACATCAAGACGCTTGCCAAGCACTTTGATGTTCAGGGGATCCCTTGTTTGGTAATATTGGGGC CTGATGGTAAGACCATCACAACTAACGGTAGGAGCCTAATAAACTTGTACCAAGACAGTGCATTTCCGTTTACGGAATCAAAAGTTGAATTGCTGGAGAG ACAGATGGATGAGGAGGCGAAGAGTCTTCCGAAGACGGAGCAGCACGAGGGACATAGGCACGAGTTGACATTGGTGTCTCAGGAGACAGGAGGGGGGCCA TTCATATGCTGTAATTGTGAAGAGCAAGGGCTAGGCTGGGCTTACCAGTGTTTGGATTGTGGCTATGAGTTGCATCCCAAGTGTGTTCGACCCGCTGCTG GCTCCGTCGCTAGCGTTAGTTAA
AA sequence Show only first row Show all	>Lus10017252 pacid=23165806 polypeptide=Lus10017252 locus=Lus10017252.g ID=Lus10017252.BGIv1.0 annot-version=v1.0 MRMGTVDDQDRLNVAIQATAAAQANGGGDPDCYPSPTTSRLASLLGSQTRDYLLSRDGAQVKISDLEGKVVGLYFSANWYPPCRNFNQFLIGAYQQLKTN GGSNFEIVFVSCDEDSHAFHSYRAGMPWLSVPFSDLEAKKSLTSKFEIEGIPCLVILQPGSTEGKYVESGVRNGVELMYRFGVNAFPFTKLRLDELRREE KEKHDSQTLFNLLTNHDRDYVLGHPASKQVRVGSLVGKTIGLYFSAQWCLPCEKFTPKLIEIYHKIKQSLTANESNNELDFEIVFVSNDRDQDRFESYFA QMPWLALPFGDTNIKTLAKHFDVQGIPCLVILGPDGKTITTNGRSLINLYQDSAFPFTESKVELLERQMDEEAKSLPKTEQHEGHRHELTLVSQETGGGP FICCNCEEQGLGWAYQCLDCGYELHPKCVRPAAGSVASVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60420			DC1 domain-containing protein ...		Lus10017252 [exp]	0	1
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10030141 [exp]	4.7	0.8956
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10032938 [exp]	8.1	0.8191
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10034830 [exp]	9.8	0.8449
AT4G32480			Protein of unknown function (D...		Lus10041046 [exp]	14.5	0.8472
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Lus10037808 [exp]	14.6	0.8472
AT4G27360			Dynein light chain type 1 fami...		Lus10038566 [exp]	15.9	0.8437
AT1G72030			Acyl-CoA N-acyltransferases (N...		Lus10021995 [exp]	16.0	0.8530
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10030336 [exp]	18.0	0.8358
AT4G32480			Protein of unknown function (D...		Lus10006177 [exp]	22.2	0.8398
AT2G04790			unknown protein		Lus10012354 [exp]	22.3	0.8297

Compare expression of checked genes

Lus10017252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.