Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42200 127 / 3e-38 RING/U-box superfamily protein (.1) AT2G42350 74 / 7e-17 RING/U-box superfamily protein (.1) AT4G10150 71 / 2e-15 RING/U-box superfamily protein (.1) AT4G10160 70 / 2e-15 RING/U-box superfamily protein (.1) AT1G72310 70 / 4e-15 ATL3 RING/U-box superfamily protein (.1) AT1G72220 71 / 5e-15 RING/U-box superfamily protein (.1) AT4G40070 69 / 9e-15 RING/U-box superfamily protein (.1) AT1G33480 69 / 1e-14 RING/U-box superfamily protein (.1) AT3G18773 67 / 2e-14 RING/U-box superfamily protein (.1) AT2G42360 67 / 2e-14 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005617 [exp] 234 / 2e-81 AT5G42200 108 / 6e-31 RING/U-box superfamily protein (.1) Lus10034551 [exp] 162 / 2e-52 AT5G42200 112 / 2e-32 RING/U-box superfamily protein (.1) Lus10021842 [exp] 157 / 2e-50 AT5G42200 103 / 3e-29 RING/U-box superfamily protein (.1) Lus10005814 [exp] 72 / 3e-16 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10002194 [exp] 72 / 4e-16 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1) Lus10005815 [exp] 70 / 2e-15 AT1G49230 170 / 3e-53 RING/U-box superfamily protein (.1) Lus10006787 [exp] 70 / 2e-15 AT1G49230 159 / 9e-49 RING/U-box superfamily protein (.1) Lus10034953 [exp] 71 / 4e-15 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10004460 [exp] 69 / 2e-14 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G244500 [exp] 170 / 6e-55 AT5G42200 149 / 3e-46 RING/U-box superfamily protein (.1) Potri.002G017400 [exp] 160 / 3e-51 AT5G42200 154 / 2e-48 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 69 / 2e-15 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.019G091400 [exp] 70 / 3e-15 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 70 / 8e-15 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 67 / 3e-14 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.002G006400 [exp] 67 / 3e-14 AT1G76410 177 / 1e-56 RING/U-box superfamily protein (.1) Potri.001G140900 [exp] 67 / 4e-14 AT4G17920 183 / 3e-56 RING/U-box superfamily protein (.1) Potri.005G099000 [exp] 66 / 4e-14 AT1G20823 146 / 2e-44 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 67 / 5e-14 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10017253 pacid=23165843 polypeptide=Lus10017253 locus=Lus10017253.g ID=Lus10017253.BGIv1.0 annot-version=v1.0 ATGCTGCTCTCTGTTTTCCTAGCCTTATTCCTCCCCTGCGCAGGGATGAGCGCTATGTTCGTCGTCTACATTTTCCTCCTCTGGTTCGCTTCCAATCCCC CGATTACCCACCCCACCGGCGGCTACGTACTGAAACCCGAGGCCAAGATTGGACTCTCGTCCTCGGAGCTGGAGAAGCTCCCCAGAGTCGCCGGGAAGGA GCTGGTGATGGGGAACGAATGCGCAGTCTGCCTCGATGAGATTGAGGCAGAGGATCCAGCTAGAATGATCCCTGTATGTAACCATGGATACCATCTTGAA TGCGCCGACAAGTGGCTGTCCAAGCATCCGTTTTGCCCCGTTTGCCGCAGAAAAATCGATCTCGCTCCGTTCCTCAATCCCGACCCAGACGACAGTCCTT GCTGA
AA sequence Show only first row Show all	>Lus10017253 pacid=23165843 polypeptide=Lus10017253 locus=Lus10017253.g ID=Lus10017253.BGIv1.0 annot-version=v1.0 MLLSVFLALFLPCAGMSAMFVVYIFLLWFASNPPITHPTGGYVLKPEAKIGLSSSELEKLPRVAGKELVMGNECAVCLDEIEAEDPARMIPVCNHGYHLE CADKWLSKHPFCPVCRRKIDLAPFLNPDPDDSPC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42200			RING/U-box superfamily protein...		Lus10017253 [exp]	0	1
AT1G12420		ACR8	ACT domain repeat 8 (.1)		Lus10007004 [exp]	3.2	0.8025
AT4G32840		PFK6	phosphofructokinase 6 (.1)		Lus10005488 [exp]	5.2	0.7705
AT3G54000			unknown protein		Lus10017206 [exp]	9.5	0.7837
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10031368 [exp]	12.6	0.7043
AT4G16490			ARM repeat superfamily protein...		Lus10038812 [exp]	23.0	0.7700
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029266 [exp]	23.7	0.7534
AT4G18260			Cytochrome b561/ferric reducta...		Lus10007333 [exp]	24.9	0.7459
AT5G52540			Protein of unknown function (D...		Lus10027508 [exp]	26.1	0.7603
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10037720 [exp]	26.5	0.7143
AT2G47650		UXS4	UDP-xylose synthase 4 (.1.2)		Lus10008216 [exp]	27.1	0.7338

Compare expression of checked genes

Lus10017253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.