Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20225 243 / 2e-81 Thioredoxin superfamily protein (.1) AT1G76020 238 / 2e-79 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005616 [exp] 412 / 2e-148 AT1G20225 251 / 9e-85 Thioredoxin superfamily protein (.1) Lus10021843 [exp] 284 / 2e-97 AT1G20225 238 / 1e-79 Thioredoxin superfamily protein (.1) Lus10034550 [exp] 61 / 7e-12 AT1G76020 57 / 3e-11 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G244400 [exp] 294 / 2e-101 AT1G20225 259 / 1e-87 Thioredoxin superfamily protein (.1) Potri.002G017500 [exp] 271 / 2e-92 AT1G20225 251 / 6e-85 Thioredoxin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017254 pacid=23165824 polypeptide=Lus10017254 locus=Lus10017254.g ID=Lus10017254.BGIv1.0 annot-version=v1.0 ATGCAGATGCTACAGATAATACCTCTCGTGTTCCTCTGTTTGGTCCTCCTGAGTTCTCTGAATTCGCTCTCTGTTCGATCCCAGAATTTGCCCCCAGCAA AGTACGATGGGTTTCTCTACACTTGCGGCCGGGCCGACCCGGACGCCGTTCTGATCGAGGCCTTCTTCGACCCGGTTTGCCCTGATAGCAGAGATGCGTG GCCTCCTCTCAAGCAAGCTCTCGACCGCTACGGCTCTCGGGTCTCCTTGATCCTCCATCTCCTCCCTTTACCTTACCATGACAATTCGTATGTCGCTTCT CGAGCTCTACACATTGCGAATTCATTGAACGCTTCCTCTACGTTTCCCTTACTGGAGCGATTCTTTCGACATCAGGAGAAGTTCTATAACAGTCGGACCG TGAACGTGACAAAAGCTGCCGTTGTGAAAGAGGTGGTTGATTTTGCAGCTGTAGCAGTTGGACATTCTCTGATCTCTGAATTTGAAGCTGGCTTCACAGA CAGTAGAACTGATCTCAAGGCACGGGTGTCCTTCAAGTTTAGTGCGTCGAGAGGCATCTACGGCACTCCATCTTTCCTTGTAAATGGGTTTGTCTTGCCT GACATTGGCTCACCCCTTGATTTCAATGGCTGGAAAAACGTCATCGACCCATTGGTTGGCACAAACAAGGACGACCACTTCGATTTTATGGGCATCTTTT GA
AA sequence Show only first row Show all	>Lus10017254 pacid=23165824 polypeptide=Lus10017254 locus=Lus10017254.g ID=Lus10017254.BGIv1.0 annot-version=v1.0 MQMLQIIPLVFLCLVLLSSLNSLSVRSQNLPPAKYDGFLYTCGRADPDAVLIEAFFDPVCPDSRDAWPPLKQALDRYGSRVSLILHLLPLPYHDNSYVAS RALHIANSLNASSTFPLLERFFRHQEKFYNSRTVNVTKAAVVKEVVDFAAVAVGHSLISEFEAGFTDSRTDLKARVSFKFSASRGIYGTPSFLVNGFVLP DIGSPLDFNGWKNVIDPLVGTNKDDHFDFMGIF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20225			Thioredoxin superfamily protei...		Lus10017254 [exp]	0	1
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10038977 [exp]	3.2	0.9031
AT1G18390			Protein kinase superfamily pro...		Lus10029132 [exp]	3.5	0.9015
AT1G67330			Protein of unknown function (D...		Lus10015780 [exp]	3.7	0.9193
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Lus10033288 [exp]	5.9	0.8538
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10018795 [exp]	6.2	0.8658
AT3G17800			Protein of unknown function (D...		Lus10017989 [exp]	9.4	0.8876
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10010168 [exp]	9.4	0.8979
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10013488 [exp]	9.6	0.8561
AT2G23140			RING/U-box superfamily protein...		Lus10011514 [exp]	10.4	0.8599
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10023077 [exp]	10.7	0.8522

Compare expression of checked genes

Lus10017254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.