Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76010 197 / 9e-62 Alba DNA/RNA-binding protein (.1) AT1G20220 181 / 1e-55 Alba DNA/RNA-binding protein (.1) AT3G07030 139 / 7e-39 Alba DNA/RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005615 [exp] 325 / 9e-113 AT1G76010 264 / 3e-87 Alba DNA/RNA-binding protein (.1) Lus10034549 [exp] 242 / 4e-79 AT1G76010 276 / 5e-91 Alba DNA/RNA-binding protein (.1) Lus10021844 [exp] 239 / 7e-78 AT1G76010 280 / 1e-92 Alba DNA/RNA-binding protein (.1) Lus10022807 [exp] 140 / 5e-39 AT3G07030 241 / 4e-76 Alba DNA/RNA-binding protein (.1) Lus10011874 [exp] 135 / 1e-36 AT3G07030 239 / 2e-73 Alba DNA/RNA-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G017600 [exp] 253 / 4e-84 AT1G76010 216 / 3e-68 Alba DNA/RNA-binding protein (.1) Potri.005G244300 [exp] 231 / 5e-76 AT1G76010 221 / 7e-71 Alba DNA/RNA-binding protein (.1) Potri.002G066100 [exp] 186 / 8e-58 AT1G20220 200 / 1e-62 Alba DNA/RNA-binding protein (.1) Potri.005G194600 [exp] 181 / 2e-56 AT1G20220 194 / 6e-61 Alba DNA/RNA-binding protein (.1) Potri.002G240601 [exp] 126 / 9e-35 AT3G07030 199 / 3e-61 Alba DNA/RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0441 [flax] [poplar] AlbA PF01918 [flax] [poplar] Alba Alba
Representative CDS sequence Show only first row Show all	>Lus10017255 pacid=23165848 polypeptide=Lus10017255 locus=Lus10017255.g ID=Lus10017255.BGIv1.0 annot-version=v1.0 ATGGATCGGTACCAAAGAGTTGAGAAGCCAAGAGCTGAGACTCCCATCGCTGAGAATGAGATTCGAATTACTAGTCAGGGAAGGATGCGCAGTTATATCT CGTACGCCATGAGCCTGCTTCAAGATAAAGGTGCAAATGAAATTGTATTCAAGGCAATGGGAAGAGCCATCAACAAGACTGTGACAATAGTCGAGCTTAT CAAGAGAAGGATTGTTGGTCTTCACCAAATCACGTCAATTGGGTCTACTGATATAACAGATACATGGGAACCCCTAGAGGAAGGCCTCCTTCCTTTGGAG ACTACAAGGCATGTGTCAATGATTACGATTACGCTTTCCAAAGTGGAATTGGATACATCATCTGTCGGGTATCAACCTCCATTGTCTGCTGACCAGGTGA AAGCCTCCAACGATTATGAATATGAAGGAGAGGGATCTCCAAATGCCCGAGGTAGAGGTCAAGGTGGTAGAGGAAGGTCAAGGGGTCGAGGAAATGGGTA TGTGTCTGTTGAGCATGAAGATGGAGGGTACGATCCGCCCCACTATGGCAGGGGTAGGGGCCGAGGTAGAGGACGTGGGGGTTTCCGTGGCCGTGGGAGG GGAGGTTATGATGTTGCACACGCTGAGTTGCAGCGAGATGGGAGCTACAATAACGAATCTCCTCCACAAGACCATTACGAATCTCCTCCACAAGGCCGTT ATGAATCTCCACCGCAAGGCCGTGGCAAGTCCCCATTGCCTACATCATTGCGGGCTGTCCTCTAA
AA sequence Show only first row Show all	>Lus10017255 pacid=23165848 polypeptide=Lus10017255 locus=Lus10017255.g ID=Lus10017255.BGIv1.0 annot-version=v1.0 MDRYQRVEKPRAETPIAENEIRITSQGRMRSYISYAMSLLQDKGANEIVFKAMGRAINKTVTIVELIKRRIVGLHQITSIGSTDITDTWEPLEEGLLPLE TTRHVSMITITLSKVELDTSSVGYQPPLSADQVKASNDYEYEGEGSPNARGRGQGGRGRSRGRGNGYVSVEHEDGGYDPPHYGRGRGRGRGRGGFRGRGR GGYDVAHAELQRDGSYNNESPPQDHYESPPQGRYESPPQGRGKSPLPTSLRAVL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10017255 [exp]	0	1
AT1G15420			unknown protein		Lus10007894 [exp]	1.7	0.8982
AT3G02080			Ribosomal protein S19e family ...		Lus10020836 [exp]	3.5	0.8853
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002027 [exp]	4.7	0.8910
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10009017 [exp]	5.3	0.8486
AT5G65860			ankyrin repeat family protein ...		Lus10032850 [exp]	6.0	0.8658
AT2G46290			Transducin/WD40 repeat-like su...		Lus10010332 [exp]	6.5	0.8219
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10035503 [exp]	7.1	0.8356
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10021315 [exp]	7.2	0.8775
AT1G26880			Ribosomal protein L34e superfa...		Lus10036750 [exp]	8.9	0.8736
AT3G56510			RNA-binding (RRM/RBD/RNP motif...		Lus10014585 [exp]	10.2	0.8486

Compare expression of checked genes

Lus10017255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.