Plant FIBer expression Database

Lus10017256 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G20190 348 / 4e-122 ATHEXPALPHA1.14, ATEXP11, ATEXPA11 EXPANSIN 11, expansin 11 (.1)
AT4G01630 295 / 4e-101 ATEXP17, ATHEXPALPHA1.13, ATEXPA17 EXPANSIN 17, expansin A17 (.1)
AT1G69530 288 / 3e-98 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
AT2G40610 285 / 2e-97 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1)
AT5G05290 283 / 2e-96 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1)
AT2G39700 281 / 1e-95 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1)
AT2G03090 280 / 3e-95 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1)
AT2G37640 280 / 4e-95 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1)
AT5G56320 275 / 3e-93 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1)
AT3G55500 274 / 7e-93 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021845
[exp]
388 / 1e-137 AT1G20190 397 / 1e-141 EXPANSIN 11, expansin 11 (.1)
Lus10034548
[exp]
385 / 1e-136 AT1G20190 400 / 1e-142 EXPANSIN 11, expansin 11 (.1)
Lus10007205
[exp]
294 / 2e-100 AT4G01630 400 / 2e-142 EXPANSIN 17, expansin A17 (.1)
Lus10034227
[exp]
290 / 3e-99 AT2G40610 416 / 7e-149 expansin A8 (.1)
Lus10038013
[exp]
287 / 6e-98 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1)
Lus10009253
[exp]
287 / 9e-98 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1)
Lus10042214
[exp]
286 / 2e-97 AT2G40610 393 / 7e-140 expansin A8 (.1)
Lus10008603
[exp]
285 / 3e-97 AT2G40610 397 / 2e-141 expansin A8 (.1)
Lus10026614
[exp]
279 / 1e-94 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G244100
[exp]
392 / 3e-139 AT1G20190 404 / 3e-144 EXPANSIN 11, expansin 11 (.1)
Potri.002G017900
[exp]
385 / 7e-137 AT1G20190 408 / 9e-146 EXPANSIN 11, expansin 11 (.1)
Potri.016G135200
[exp]
310 / 7e-107 AT2G40610 400 / 6e-143 expansin A8 (.1)
Potri.006G108000
[exp]
308 / 3e-106 AT2G40610 379 / 2e-134 expansin A8 (.1)
Potri.019G057500
[exp]
307 / 6e-106 AT2G40610 374 / 2e-132 expansin A8 (.1)
Potri.002G184700
[exp]
300 / 6e-103 AT4G01630 394 / 4e-140 EXPANSIN 17, expansin A17 (.1)
Potri.001G001100
[exp]
288 / 1e-98 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1)
Potri.008G057100
[exp]
285 / 6e-97 AT2G39700 459 / 6e-166 expansin A4 (.1)
Potri.008G088300
[exp]
283 / 1e-96 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Potri.010G167200
[exp]
283 / 2e-96 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0159 E-set PF01357 Expansin_C Expansin C-terminal domain
CL0199 DPBB PF03330 DPBB_1 Lytic transglycolase
Representative CDS sequence
>Lus10017256 pacid=23165809 polypeptide=Lus10017256 locus=Lus10017256.g ID=Lus10017256.BGIv1.0 annot-version=v1.0
ATGGCAAAGCAACAGCTAATTCTCACTCTTTCACTCCTACTGATCATCTTCATCTTCTCTCTCAGTGCTCTCAATGTTGATGCCTTCTCTGCTTCCGGTT
GGTCCAAAGCCCACGCCACTTTCTACGGCGGTGGTGACGCATCCGGAACCATGGGTGGGGCTTGTGGGTATGGTGACTTATACTCGACTGGATACGGGAC
TCGAACTGCGGCACTCAGTACTGCCATGTTCAACAATGGAGCTTCTTGTGGGGAGTGTTACAAAATCATATGTGACCATCGAACAGACCCGGAATGGTGT
GTCAAGGGAAGGTCTATCACTGTCACCGTCACGAATTACTGTCCTCCGAATTATGCCCTCTCGAATGACGATGGCGGATGGTGTAACCCGCCGTTGAAGC
ATTTCGACATGGCTCAGCCCGCTTGGGAGAAGATTGGGATCTACAGGGGAGGCATTATCCCTGTTCTATATCAGAGGGTGCCGTGTAAGAAGCATGGTGG
CGTGAGGTTTACCATGAACGGACATGACTACTTTGAGCTGGTGTTGATTAGTAACGTGGCGGCAGCCGGATCTATTCAGTCCGTGTCGATTAAGGGTTCG
AAGACGGGGTGGACATCCATGTCGAGAAACTGGGGATCCAATTGGCAGTCGAATTTATACCTTAACGGCCAATCTTTATCATTCAGGATCACGATGGTTG
ATGGGGAGACGAGAACTTTCGACGAGATTGTGCCGTCCAACTGGGGATTTGGCCAGACTTTCTCTAGTCCACTACAGTTCTGA
AA sequence
>Lus10017256 pacid=23165809 polypeptide=Lus10017256 locus=Lus10017256.g ID=Lus10017256.BGIv1.0 annot-version=v1.0
MAKQQLILTLSLLLIIFIFSLSALNVDAFSASGWSKAHATFYGGGDASGTMGGACGYGDLYSTGYGTRTAALSTAMFNNGASCGECYKIICDHRTDPEWC
VKGRSITVTVTNYCPPNYALSNDDGGWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCKKHGGVRFTMNGHDYFELVLISNVAAAGSIQSVSIKGS
KTGWTSMSRNWGSNWQSNLYLNGQSLSFRITMVDGETRTFDEIVPSNWGFGQTFSSPLQF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G20190 ATHEXPALPHA1.14... EXPANSIN 11, expansin 11 (.1) Lus10017256
[exp]
0 1

Lus10017256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.