Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06880 182 / 3e-46 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G23030 80 / 8e-15 PUB11 ARM repeat superfamily protein (.1) AT1G71020 79 / 1e-14 ARM repeat superfamily protein (.1.2) AT4G21350 77 / 2e-14 PUB8, B80 plant U-box 8 (.1) AT1G29340 78 / 3e-14 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT3G46510 77 / 7e-14 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G42340 76 / 1e-13 PUB15 Plant U-Box 15 (.1) AT1G49780 74 / 2e-13 PUB26 plant U-box 26 (.1) AT3G19380 74 / 3e-13 PUB25 plant U-box 25 (.1) AT1G27910 74 / 5e-13 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013551 [exp] 2716 / 0 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10034937 [exp] 714 / 0 AT3G06880 248 / 6e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023666 [exp] 585 / 0 AT3G06880 246 / 5e-68 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10036201 [exp] 152 / 4e-37 AT3G06880 61 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10038340 [exp] 135 / 7e-32 AT3G06880 66 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023667 [exp] 122 / 2e-28 AT2G28830 84 / 9e-17 PLANT U-BOX 12 (.1) Lus10039197 [exp] 120 / 4e-27 AT1G23030 79 / 2e-14 ARM repeat superfamily protein (.1) Lus10013745 [exp] 113 / 7e-25 AT1G23030 78 / 2e-14 ARM repeat superfamily protein (.1) Lus10043471 [exp] 82 / 2e-15 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G240100 [exp] 1787 / 0 AT3G06880 237 / 3e-63 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G021600 [exp] 1702 / 0 AT3G06880 231 / 3e-61 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G083600 [exp] 691 / 0 AT3G06880 219 / 1e-57 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G220800 [exp] 208 / 5e-54 AT3G06880 1115 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G117300 [exp] 180 / 8e-46 AT3G06880 53 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G118600 [exp] 169 / 2e-42 AT3G06880 54 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G214100 [exp] 139 / 5e-33 AT5G42340 84 / 4e-16 Plant U-Box 15 (.1) Potri.001G012300 [exp] 99 / 1e-20 AT5G42340 72 / 7e-13 Plant U-Box 15 (.1) Potri.010G113900 [exp] 88 / 2e-17 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.008G128600 [exp] 82 / 1e-15 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10017257 pacid=23165845 polypeptide=Lus10017257 locus=Lus10017257.g ID=Lus10017257.BGIv1.0 annot-version=v1.0 ATGGAGCAGAAGAACATTTGCAAGGTGTTGACAACATCAGTAGTGAGTTTCATCCAAGACCAACTGATCAACAAGGAGAAAAGGATTCAGCACAAGGAAC AATGCGCAGAGAGATTAGCCGCCAAAGATGGCAACAATATCGACGAGGTCCGATACTCGGATCAAGCCGTCTTGGCGAATTTGGACTGGGGAATGGAAGC TCTGGAAGAAGCAATAGGAACATCCAACAAGGAGACTAAGCTAGCAAGATTGGACTACGCCGAAAAGATGTTACAAGTCTGCGCAATGCTTGATTGCACC CATACAACAGCCGGCGTGCCAAACTTCTACCTATCAGCTTGGGCTCATCTCAACCTGGCATACCTATGGAAGCTGAGGAACAACGTTCACAACTCGGTCA GCCACGTTCTGGAGATGTTCGTTATCGATCCATTCTTTTCCAGGGTGGATTTCGCTCCCGAGCTGTGGAAGGACTTGTTTCTCCCTCAAATGGACTCTGT CGTTGGGTGGTACTCTGAGGTGAGGCACAAGCTGATGATGGACGTTATCCCTGACTCTTCTGATATGTCCTTCACGGCCGATTTGGATCAGTTCTTCAAT GAGTCGTTCTTGTACTCGATGTCGCCTGAGCAAGTACAGAAATTTCAGAAGGTTGAACAGGTTTATGGGGAGTCGTTGGATGAGAATACCAGGATGTTTG CCAGGTATTTCATGGAGTGTATGAGTTGTGATGACTCGTCAACCAAGAATCGGAAGATGCCAACCGCTGAACCACCGATGCATCCTACGAGTGAAGTCAG CAGCACAAGTAGTAGAATTCCTGATTTTGTCAGCTTTGGTCCAATTCTACCTAAAACTGCTGGCGTCCCCAAAGACAAAAATGATGTCCAACAGCCCACC AGCAGGGCTAGCTTTTCATCCTTCCTGAGAAATGAGTCATCCAAGATGTTGGGCGTGAGGCAGCCAATTCCTGAAGAAGAAGAAGAGGAGGAGGATGTTG AGCCTGAAGATGTGCGGCGTAACGAGTCGATGAGCGTTAGGCGGACCAAAAAGGAAACTAGTGTCAAGAGTCAATCATCAAAGCCATCTCCTGGAGCTTC TCCAAGGACTTGTTCTTCTCATTCTTCTTCGTCCTCTTCTTCTCCTTCCCCAGAACTTCATCAATCACCGGCACTGCGCCTTCTCCGTACTCGTATCAGG GAATCCTCCATTTCCAACTCTTCTTTGCCTGCTTCCCCCACCATTAACAGCGATTCCAGCTTCAACTCGCCCCGATCTGATGTTGATGGATTGGACTGGA GGAGAAATGGAAATGAAAGGGATGGTCGTATGAGGAACATGAGTTACGAAACTCTGAATAACCCCTGCTTCGAGAACAGCTCTGTGAATGAAGGAGACGA TGGAAACCAAAGCTGCATTTCAATCCCAATGTCCGACAGCCTAAGCGCCACACGTTCAAGACCTCCGAAGGATTTCGTCTGTCCCATCACAGGGATGTTG TTCAACGACCCAGTGACTCTGGAAACAGGACAGACTTACGAGAGGAAAGCCATTCAGGAATGGGTGCATACAGGAAACGGAACATGTCCCATTACTCGTC AGCCGCTCTCAGCAAATTCACTTCCCAAGACCAACTACGTACTGAAACGCCTCATCACTTCCTGGAAACAACAGCACCCTGATCTTGCCCACGAGTTTTC TTACTCCGAATCCCCCAAGGGTCCTTTTAGCCCCGCAAGGAGCCTTACAACTACCAATTCTTCTGTTACCAATTCAAATACCAAGGAATGTTCTGACCAG AACAGACCACACCACCAGCAAAGAGCCTCTAGATTCGGCCCTAATTCCACACTCGGCGTGTCGAATTCGCCAACGAGTGTGCTGTCTCAGGCAGCGATCG ATTCGATCATAAACAAGTTGCAGCCTTACATGTCTTGTCTGTGTACATCTGATAATCTGCAGGAATGTGAATCTGGGGTCTTGGCAATAGCCAAGCTGTG GAAGGATGCAGGAGGTGATCCAACGGTTCAGGTCTACTTGTCAAAGCCGACGGTTGTTAATGGGTTTGTGGAAGTGCTTTCAGCTTCCTTGAATAGGGAA ATTCTCAAAGTCTCAATCTTTCTCCTTTCCGAACTGATGTATGTGGACGAAAGTGTTGCAAGGACGCTGACCAATGTCGATTCTGATTTCGATTGCTTGG CTGCTTTATTGAAAAATGGGCTGTCAGAAGCTGCTGTCCTGATCTACCAGCTTCAGCCAAGTTTCGCTCAGCTTTCGTCTCATGATTTCATACCTTCGAT TATCCAATTGATTGCTCGGAAAGGAAAAGAATCTGATGATGTTGAGTTGGTTATGGATCCAAAAGATGCAGCCATAGCTATGCTAGAGGTTTTACTCTGT GAAGGAGATGAAAACAGTAGGGTGACTAATGCAATGAGTGTTATTAGTTCCAACGGCATTCCAGCTCTTGTTAAGTGCTTGGAAAGGCTGGAGGGCAGAG ATTCTGTTGTCTCCATACTTGTGTGTTGTATGAATGCTGATAAAAGCTGCCGCAACTTGATCGCCAAGAGGATAGAACTCTCTCCTGTTCTTGAAATGTT CCATTCTGGTGCTGATAGTGTCAAAGCCAGGTGCATCGATTTCCTGTCCGAGCTAGTCCGGTTAAACAGGAGGAATTCCTGCAATCAGATTCTGAAGACA ATCAGAGATGAGGGGGCATTCAGCACAATGCATACCTTTCTTGTCTATCTTCAAATGGCGCCAATGGAGCAGCAACCTGCAATTGCTACTCTTCTGCTTC AGCTTGATCTGCTGGTATTTACTGCTGATTTGATTCCTTTCTCAACTGTTTTCACAATCCAAAAGCAAAACTTATCATACCGAGAGATTCTGATAGAGAA GTTCATTCTTTTGCACAAGGTCGAGCCAAGAAAGATGAGCATTTACAGAGAGGAAACTGTGGAGACATTGATTGAAGCACTTCAGAAGAAGGACTTCAGC AGCTCTCAAATGATGGCTCTGGACGAAATTGTATGTCTCTCAGGTCGCCTTACATCGATGGGGACATCGTATATGGAGTCCTGGTTACTTAAGATGGCAG GTTTTGATAAACCTTACAACAATCTGATGAAGGCTGAGAGGGCAAACAAGTTTGATAATGACTATGCCGAAACAATGGAAGAGGAGGAGAAAGCGGCAAA CTGTTGGGAGAGAAGAGTGGCATTTGTGCTGTGCAACCATGAGAAAGGTGCCATCTTCAAAGCCTTAGCGGAATGCTTCAGGAGCAACTCCATTGAAATG GCAAAGTCATGTCTTGTCACCTCCACATGGCTAACTCACATGCTCTCAATTCTTCCTGATACCGGGGTGAGAGATGTCGCCTCAAAGGCCTTGCTTGACG AGTTTGTGAACATCCTCCAGTCCGGAAATACCGAAGAGAAGGTCATGGCAACTCTCTCTTTGAAAAGCTTCATTACTGATCCAGCTGCTCTCCAAGAGCT GGGGAAATACGCTAGATGCATATACAAGACATTGAGGAAGCTCAAGAAGTACTCCCCCATGATCTCAGATGTTCTGAAATCTTTGATCAACTCTTCATTT GTTGATGCTTCAGAGTTGTGGAATTGGAGTGAAGTGGCAGAGCTGGAGTCATGCCAGAATGGTGAAGTTCTGTCCTTGGTTCATCTCAAAGGCAGGTTGA TAAGCAGCCATTCTGATGGAACTATTAAGCTGTGGGATGCTGGAAAGAGGGTTCCGAGGGTGATCCAAGAACTTCGAGAGCATAGCAAGGCCGTTACTTG CCTCTACCTTTCCCCTGGCGACAACAAGTTATACAGTGGCTCATTAGACAAGACAATCAGGGTATGGGTGATAAAACCTGAAGAGATTCATTGTGTGCAA GTGCATGATGTATACAACTGGAGTGGAAGTCCTAGGCACGTAAACTTCAACAAGAACGTGAGGTGCCTGGCCATGTCAGGGGACAAGTTATACTGTGGCT GCTCTTGCTACAGTATCCAGGAAGTGGATCTGTTGAAACTCAGCTCAAGTCCATTCTACTACGGAACCAGAAAGCTGCTAGGCAAACAATCGCTCAACTC AATGAAGATACAAGATGGGCTGTTGTTTGCAGCAGGATCCGCCCTGGACGGAACCGCGGGGAAAGTGTTTGCTCTGTCCAGCAAGGCAGTGGTGGGATCA CTGACCACGAGCTTCGACGTCAAGCACATTGTTGTGAACAATGACTTCATAATCACAGTGACAAAATGGGGGGTGGTGGAGGTTTGGCTTAGAGAACGAG TCTCCAAAGTTGCATGTATAAGAATGAGCGGAAGCGGGAACACTAAGGTCTCTTGCTTAACTACGGATACAGACGGTGGAATGCTGTACGCTGGATCCTC CGACGGCAAGATTCAGGTCAGCACAATTCTTTCTTGTTAA
AA sequence Show only first row Show all	>Lus10017257 pacid=23165845 polypeptide=Lus10017257 locus=Lus10017257.g ID=Lus10017257.BGIv1.0 annot-version=v1.0 MEQKNICKVLTTSVVSFIQDQLINKEKRIQHKEQCAERLAAKDGNNIDEVRYSDQAVLANLDWGMEALEEAIGTSNKETKLARLDYAEKMLQVCAMLDCT HTTAGVPNFYLSAWAHLNLAYLWKLRNNVHNSVSHVLEMFVIDPFFSRVDFAPELWKDLFLPQMDSVVGWYSEVRHKLMMDVIPDSSDMSFTADLDQFFN ESFLYSMSPEQVQKFQKVEQVYGESLDENTRMFARYFMECMSCDDSSTKNRKMPTAEPPMHPTSEVSSTSSRIPDFVSFGPILPKTAGVPKDKNDVQQPT SRASFSSFLRNESSKMLGVRQPIPEEEEEEEDVEPEDVRRNESMSVRRTKKETSVKSQSSKPSPGASPRTCSSHSSSSSSSPSPELHQSPALRLLRTRIR ESSISNSSLPASPTINSDSSFNSPRSDVDGLDWRRNGNERDGRMRNMSYETLNNPCFENSSVNEGDDGNQSCISIPMSDSLSATRSRPPKDFVCPITGML FNDPVTLETGQTYERKAIQEWVHTGNGTCPITRQPLSANSLPKTNYVLKRLITSWKQQHPDLAHEFSYSESPKGPFSPARSLTTTNSSVTNSNTKECSDQ NRPHHQQRASRFGPNSTLGVSNSPTSVLSQAAIDSIINKLQPYMSCLCTSDNLQECESGVLAIAKLWKDAGGDPTVQVYLSKPTVVNGFVEVLSASLNRE ILKVSIFLLSELMYVDESVARTLTNVDSDFDCLAALLKNGLSEAAVLIYQLQPSFAQLSSHDFIPSIIQLIARKGKESDDVELVMDPKDAAIAMLEVLLC EGDENSRVTNAMSVISSNGIPALVKCLERLEGRDSVVSILVCCMNADKSCRNLIAKRIELSPVLEMFHSGADSVKARCIDFLSELVRLNRRNSCNQILKT IRDEGAFSTMHTFLVYLQMAPMEQQPAIATLLLQLDLLVFTADLIPFSTVFTIQKQNLSYREILIEKFILLHKVEPRKMSIYREETVETLIEALQKKDFS SSQMMALDEIVCLSGRLTSMGTSYMESWLLKMAGFDKPYNNLMKAERANKFDNDYAETMEEEEKAANCWERRVAFVLCNHEKGAIFKALAECFRSNSIEM AKSCLVTSTWLTHMLSILPDTGVRDVASKALLDEFVNILQSGNTEEKVMATLSLKSFITDPAALQELGKYARCIYKTLRKLKKYSPMISDVLKSLINSSF VDASELWNWSEVAELESCQNGEVLSLVHLKGRLISSHSDGTIKLWDAGKRVPRVIQELREHSKAVTCLYLSPGDNKLYSGSLDKTIRVWVIKPEEIHCVQ VHDVYNWSGSPRHVNFNKNVRCLAMSGDKLYCGCSCYSIQEVDLLKLSSSPFYYGTRKLLGKQSLNSMKIQDGLLFAAGSALDGTAGKVFALSSKAVVGS LTTSFDVKHIVVNNDFIITVTKWGVVEVWLRERVSKVACIRMSGSGNTKVSCLTTDTDGGMLYAGSSDGKIQVSTILSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06880			Transducin/WD40 repeat-like su...		Lus10017257 [exp]	0	1
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	7.1	0.9482
AT3G47250			Plant protein of unknown funct...		Lus10020563 [exp]	9.6	0.9432
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Lus10014415 [exp]	10.1	0.9415
AT5G65660			hydroxyproline-rich glycoprote...		Lus10028221 [exp]	10.5	0.9056
AT2G24130			Leucine-rich receptor-like pro...		Lus10010772 [exp]	12.1	0.9066
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10036603 [exp]	12.8	0.9414
AT4G35150			O-methyltransferase family pro...		Lus10033656 [exp]	14.5	0.9387
AT5G06730			Peroxidase superfamily protein...		Lus10008174 [exp]	15.5	0.9095
AT3G19200			unknown protein		Lus10014046 [exp]	17.3	0.8980
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10033867 [exp]	22.3	0.9354

Compare expression of checked genes

Lus10017257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.