Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16600 280 / 1e-97 ROC3 rotamase CYP 3 (.1.2) AT2G21130 266 / 2e-92 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G34870 265 / 9e-92 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT4G38740 263 / 5e-91 ROC1 rotamase CYP 1 (.1) AT3G56070 246 / 1e-84 ROC2 rotamase cyclophilin 2 (.1.2) AT2G29960 219 / 2e-73 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G58710 215 / 7e-72 ROC7 rotamase CYP 7 (.1) AT3G55920 208 / 1e-68 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G63400 206 / 9e-66 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT5G13120 192 / 4e-62 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013552 [exp] 317 / 1e-112 AT2G16600 297 / 1e-104 rotamase CYP 3 (.1.2) Lus10007579 [exp] 276 / 2e-96 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10012167 [exp] 273 / 3e-95 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10042553 [exp] 251 / 1e-86 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2) Lus10022012 [exp] 247 / 7e-85 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10018238 [exp] 218 / 5e-73 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10040666 [exp] 218 / 7e-73 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10014846 [exp] 208 / 6e-68 AT2G29960 310 / 6e-107 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10038315 [exp] 200 / 2e-65 AT2G29960 313 / 1e-109 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G240200 [exp] 293 / 5e-103 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.002G021500 [exp] 285 / 7e-100 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.009G130100 [exp] 277 / 1e-96 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.004G168800 [exp] 271 / 2e-94 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.019G014396 [exp] 246 / 2e-84 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.009G046500 [exp] 218 / 6e-73 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.001G251700 [exp] 214 / 3e-71 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1) Potri.010G189000 [exp] 212 / 4e-70 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G215800 [exp] 211 / 4e-65 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.002G047200 [exp] 206 / 4e-63 AT3G63400 229 / 1e-66 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10017258 pacid=23165788 polypeptide=Lus10017258 locus=Lus10017258.g ID=Lus10017258.BGIv1.0 annot-version=v1.0 ATGGCGGCCAATCCCAAAGTTTACTTCGACATGTCCATCGGCGGCGTCCCCGCTGGGAGGATAGTGATGGAGCTCTTCAAGGACACGACGCCCATGACCG CCGAGAACTTCCGCGCTCTCTGCACCGGGGAGAAAGGGGTCGGCCGGAGGGGAAAGCCCCTCCACTACAAGGGATCCAAGTTCCACCGTGTCATCCCCGG GTTCATGTGCCAGGGCGGCGATTTCACTGCTGGCAACGGTACCGGCGGAGAATCCATCTACGGAGACAAGTTCCGTGACGAGAACTTCATCAAGAAGCAT ACCGGCCCTGGAATCCTGTCTATGGCAAACGCCGGGCCTGGGACCAACGGATCTCAGTTCTTCATATGCACTGACAAGACTGAGTGGCTGGACGGGAAGC ACGTCGTGTTTGGCAAAGTTGTGGAAGGGATGAATGTGGTCAAGGCCGCCGAGCGGGTTGGGTCCCAGTCGGGTCGAACCGCCAAGCCGGTTGTGATCGC TGACTGTGGTCAACTCTGTTAA
AA sequence Show only first row Show all	>Lus10017258 pacid=23165788 polypeptide=Lus10017258 locus=Lus10017258.g ID=Lus10017258.BGIv1.0 annot-version=v1.0 MAANPKVYFDMSIGGVPAGRIVMELFKDTTPMTAENFRALCTGEKGVGRRGKPLHYKGSKFHRVIPGFMCQGGDFTAGNGTGGESIYGDKFRDENFIKKH TGPGILSMANAGPGTNGSQFFICTDKTEWLDGKHVVFGKVVEGMNVVKAAERVGSQSGRTAKPVVIADCGQLC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10017258 [exp]	0	1
AT4G27960		UBC9	ubiquitin conjugating enzyme 9...		Lus10005072 [exp]	4.7	0.9205
AT1G09812			unknown protein		Lus10035787 [exp]	6.3	0.9093
AT3G10300			Calcium-binding EF-hand family...		Lus10035435 [exp]	8.7	0.8860
AT1G53540			HSP20-like chaperones superfam...		Lus10017202 [exp]	8.7	0.9130
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027846 [exp]	10.5	0.9065
AT4G23410		TET5	tetraspanin5 (.1)		Lus10041411 [exp]	10.6	0.8904
AT1G19715			Mannose-binding lectin superfa...		Lus10024290 [exp]	10.7	0.9096
					Lus10020401 [exp]	12.5	0.9052
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004546 [exp]	18.3	0.9029
AT1G31335			unknown protein		Lus10040642 [exp]	20.3	0.9025

Compare expression of checked genes

Lus10017258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.