Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30755 482 / 2e-165 Protein of unknown function (DUF668) (.1) AT1G34320 457 / 3e-155 Protein of unknown function (DUF668) (.1) AT5G08660 366 / 9e-120 Protein of unknown function (DUF668) (.1) AT3G23160 95 / 2e-20 Protein of unknown function (DUF668) (.1) AT5G51670 72 / 3e-13 Protein of unknown function (DUF668) (.1) AT5G04550 66 / 4e-11 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017260 [exp] 877 / 0 AT1G30755 567 / 0.0 Protein of unknown function (DUF668) (.1) Lus10013554 [exp] 595 / 0 AT1G30755 416 / 4e-140 Protein of unknown function (DUF668) (.1) Lus10006049 [exp] 449 / 4e-152 AT1G34320 919 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017136 [exp] 393 / 1e-130 AT1G34320 570 / 0.0 Protein of unknown function (DUF668) (.1) Lus10018317 [exp] 388 / 3e-128 AT1G34320 559 / 0.0 Protein of unknown function (DUF668) (.1) Lus10028708 [exp] 383 / 1e-126 AT1G34320 827 / 0.0 Protein of unknown function (DUF668) (.1) Lus10013553 [exp] 228 / 9e-73 AT1G30755 79 / 1e-17 Protein of unknown function (DUF668) (.1) Lus10021210 [exp] 95 / 2e-20 AT3G23160 659 / 0.0 Protein of unknown function (DUF668) (.1) Lus10022201 [exp] 94 / 5e-20 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G021400 [exp] 609 / 0 AT1G30755 568 / 0.0 Protein of unknown function (DUF668) (.1) Potri.005G240300 [exp] 595 / 0 AT1G30755 588 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G085900 [exp] 476 / 1e-162 AT1G34320 908 / 0.0 Protein of unknown function (DUF668) (.1) Potri.013G115300 [exp] 473 / 1e-161 AT1G34320 889 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G001500 [exp] 403 / 6e-134 AT1G34320 591 / 0.0 Protein of unknown function (DUF668) (.1) Potri.001G305800 [exp] 389 / 1e-128 AT1G34320 593 / 0.0 Protein of unknown function (DUF668) (.1) Potri.012G129900 [exp] 118 / 1e-28 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.010G074000 [exp] 89 / 2e-18 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Potri.008G164700 [exp] 87 / 7e-18 AT3G23160 661 / 0.0 Protein of unknown function (DUF668) (.1) Potri.015G131800 [exp] 86 / 1e-17 AT5G51670 442 / 1e-152 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11961 [flax] [poplar] DUF3475 Domain of unknown function (DUF3475) PF05003 [flax] [poplar] DUF668 Protein of unknown function (DUF668)
Representative CDS sequence Show only first row Show all	>Lus10017259 pacid=23165779 polypeptide=Lus10017259 locus=Lus10017259.g ID=Lus10017259.BGIv1.0 annot-version=v1.0 ATGGGGGCAGTATGTGCCGGCGGGGTGAAGAAGGATGCTAATGCCAAGCCTGCTCAGGTTAAGAGATTCTCCGGCAAGTTAGCGAAGCCGCACAAGAGCT TGGCCAAGGAGTTGGACAATTCCAACGGAGGTAAGATGAAGAAGAATAAGAATAAGAATAAGAATAAGAAGCAGACAACGACGATGCAGCAGGAGAGGAA CTATTCCGGCGAGCTGTTGCTATCTGTTTCGAGAGAGCTTAAGCCTTCCAAGCCAGCTGGAGATGGACCGCCAGCTAAGGTTACTCACAAAACCTCCTTC CTGGGGAAAGCAGGCACAATGGGGTTGGAGAAAACTCTAGAAGTTCTAGACACCCTAGGAAGTAGTATGTCAAATTTGAATGCTCGGAGTGGGTTCATCT CTGGCATGCCCTCTAGAGGGAATAAGATATCTATACTGGCATTTGAAGTAGCTAATACGATATCCAAAGGGGCAAACTTGTTTCAGTCTCTCTCAGAGGA GAATGTCAACTTCTTGACGAAAGAGATACTACATTCAGAAGGAGTAAAGCAATTGGTTTCCACAGATATGAAAGAGTTGCTAGCTATTGCTGCATCTGAC AAAAGGGAAGAATTTGATGTCTTTTCGCGTGAAGTGATTCGATTTGGAGATCTCTGTAAAGACCCCCAATGGCATAATTTGGGAAGATACTTTCCAAGAT TAGATGCAGAGCTTTCAACTGATAGACTATCGAGAGAAGAAGCTGAGCTGACTGTGCATGAGTTGACGACGTTGGTACAACATACTTCTGAACTATATCA CGAATTGCATTCATTGGACAGATTTGAACAAGATTATCATCGAAAGGTGGAGGAGCTGCAGTCCTTACACCTTCCTCAGAAAGGAGAGAGCCTATCGATT TTACAAAGTGAGTTGAAAGAACAACGAAAGCTTGTCCGGAGCTTGAAAAAGAGATATCTTTGGTCTAAAAGTTTAGAGGAGATCATGGAGAAACTTGTTG ATATTGTCACCTATGTGCACCAAGCTATCCTGGAAGCATTTGGAAATAGTGGAGTAACCGTGGCCGTTGATGAACCAGCCAACCATCAGAGGCTTGGAAA AGCTGGTCTAGCATTGCATTATGCTAACATGATCACCCAGATAGATAACATTGCATCTCGTCCGACCAGTCTTCCTCCCAATACAAGGGATTCATTATAC CGTGGGTTGCCGCCCAGTGTCAAAACATCTCTACGTTCCAGGTTGCAGACATTTGACGACAAGGAAGAGCTTACCATAACTCAAGTAAAAGCTGAAATGG AGAAGACTCTTCAGTGGATTGTACCTGTTGCCGCCAACACAACCAAGTATGCCTCTATTTCTTATAGTTCTTCCATCGCAACAAATTTGCTATCACCTTC CACTCACGTTAACTGCTGTTATGATTTGGCAAGCAGAGCACACCAAGGTTTCGGCTGGGTTGGAGAATGGGCTAGTAATACTGGGTCAGTTAACAACTCT CTTCTTTATAGCGTACATTATATGCATCCATTGGTTCGATTCTGA
AA sequence Show only first row Show all	>Lus10017259 pacid=23165779 polypeptide=Lus10017259 locus=Lus10017259.g ID=Lus10017259.BGIv1.0 annot-version=v1.0 MGAVCAGGVKKDANAKPAQVKRFSGKLAKPHKSLAKELDNSNGGKMKKNKNKNKNKKQTTTMQQERNYSGELLLSVSRELKPSKPAGDGPPAKVTHKTSF LGKAGTMGLEKTLEVLDTLGSSMSNLNARSGFISGMPSRGNKISILAFEVANTISKGANLFQSLSEENVNFLTKEILHSEGVKQLVSTDMKELLAIAASD KREEFDVFSREVIRFGDLCKDPQWHNLGRYFPRLDAELSTDRLSREEAELTVHELTTLVQHTSELYHELHSLDRFEQDYHRKVEELQSLHLPQKGESLSI LQSELKEQRKLVRSLKKRYLWSKSLEEIMEKLVDIVTYVHQAILEAFGNSGVTVAVDEPANHQRLGKAGLALHYANMITQIDNIASRPTSLPPNTRDSLY RGLPPSVKTSLRSRLQTFDDKEELTITQVKAEMEKTLQWIVPVAANTTKYASISYSSSIATNLLSPSTHVNCCYDLASRAHQGFGWVGEWASNTGSVNNS LLYSVHYMHPLVRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30755			Protein of unknown function (D...		Lus10017259 [exp]	0	1
AT1G61140		EDA16	embryo sac development arrest ...		Lus10018465 [exp]	1.0	0.8634
AT2G33490			hydroxyproline-rich glycoprote...		Lus10032001 [exp]	2.4	0.8210
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10043017 [exp]	2.4	0.8227
AT1G30755			Protein of unknown function (D...		Lus10013553 [exp]	6.6	0.7582
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10032517 [exp]	8.5	0.7628
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10024233 [exp]	11.0	0.7719
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10012826 [exp]	14.5	0.7693
AT2G35710			Nucleotide-diphospho-sugar tra...		Lus10008518 [exp]	15.9	0.7481
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10040659 [exp]	16.1	0.7300
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031484 [exp]	16.5	0.7761

Compare expression of checked genes

Lus10017259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.