Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30755 535 / 0 Protein of unknown function (DUF668) (.1) AT1G34320 506 / 1e-172 Protein of unknown function (DUF668) (.1) AT5G08660 417 / 3e-138 Protein of unknown function (DUF668) (.1) AT5G51670 83 / 2e-16 Protein of unknown function (DUF668) (.1) AT3G23160 76 / 3e-14 Protein of unknown function (DUF668) (.1) AT5G04550 71 / 2e-12 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017259 [exp] 839 / 0 AT1G30755 484 / 3e-166 Protein of unknown function (DUF668) (.1) Lus10013554 [exp] 817 / 0 AT1G30755 416 / 4e-140 Protein of unknown function (DUF668) (.1) Lus10006049 [exp] 505 / 4e-172 AT1G34320 919 / 0.0 Protein of unknown function (DUF668) (.1) Lus10028708 [exp] 436 / 2e-145 AT1G34320 827 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017136 [exp] 407 / 2e-134 AT1G34320 570 / 0.0 Protein of unknown function (DUF668) (.1) Lus10018317 [exp] 403 / 2e-132 AT1G34320 559 / 0.0 Protein of unknown function (DUF668) (.1) Lus10013553 [exp] 242 / 3e-77 AT1G30755 79 / 1e-17 Protein of unknown function (DUF668) (.1) Lus10002840 [exp] 77 / 2e-14 AT5G04550 308 / 8e-98 Protein of unknown function (DUF668) (.1) Lus10021210 [exp] 77 / 2e-14 AT3G23160 659 / 0.0 Protein of unknown function (DUF668) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G021400 [exp] 736 / 0 AT1G30755 568 / 0.0 Protein of unknown function (DUF668) (.1) Potri.005G240300 [exp] 700 / 0 AT1G30755 588 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G085900 [exp] 540 / 0 AT1G34320 908 / 0.0 Protein of unknown function (DUF668) (.1) Potri.013G115300 [exp] 534 / 0 AT1G34320 889 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G001500 [exp] 443 / 6e-148 AT1G34320 591 / 0.0 Protein of unknown function (DUF668) (.1) Potri.001G305800 [exp] 424 / 2e-140 AT1G34320 593 / 0.0 Protein of unknown function (DUF668) (.1) Potri.010G233700 [exp] 80 / 2e-15 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.008G026800 [exp] 77 / 2e-14 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.012G129900 [exp] 76 / 2e-14 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.008G164700 [exp] 75 / 9e-14 AT3G23160 661 / 0.0 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11961 [flax] [poplar] DUF3475 Domain of unknown function (DUF3475) PF05003 [flax] [poplar] DUF668 Protein of unknown function (DUF668)
Representative CDS sequence Show only first row Show all	>Lus10017260 pacid=23165743 polypeptide=Lus10017260 locus=Lus10017260.g ID=Lus10017260.BGIv1.0 annot-version=v1.0 ATGGGGGCAGTATGTGCCGGCGGGGTGAAGAAGGATGCTAATGCCAAGCCTGCTCAGGTTAAGAGATTCTCCGGCAAGTTAGCGAAGCCGCACAAGAGCT TGGCCAAGGAGTTGGACAATTCCAGTGGAGCTAAGATGAATAAGAATAAGAATAAGAATAAGAAGCAGACAACGACGATGCAGCAGGAGAGGAACTATTC CGGCGAGCTGTTGCTATCTGTTTCGAGAGAGCTTAAGCCTTCCAAGCCAGCTGCAGAAGGACCGCCAGCTAAGGTTACTCACAAAACCTCCTTCCTGGGG AAAGCAGGCACAATGGGGTTGGAGAAAACTCTAGAAGTTCTAGACACCCTTGGAAGTAGTATGTCAAATTTGAATGCTCGGAGTGGGTTCATCTCTGGCA TGCCCTCTAGAGGGAATAAGATATCTATACTGGCATTTGAAGTAGCTAATACGATATCCAAAGGGGCAAACTTGTTTCAGTCTCTCTCAGAGGAGAATGT CAACTTCTTGACGAAAGAGATACTACATTCAGAAGGAGTAAAGCAATTGGTTTCCACAGATATGAAAGAGTTGCTAGCTATTGCTGCATCTGACAAAAGG GAAGAATTTGATGTCTTTTCGCGTGAAGTGATTCGATTTGGAGATCTCTGTAAAGACCCCCAATGGCATAATTTGGGAAGATACTTTCCAAGATTAGATG CAGAGCTTTCAACTGATAGACTATCGAGAGAAGAAGCTGAGCTGACTGTGCATGAGTTGACGACGTTGGTACAACATACTTCTGAACTATATCACGAATT GCATTCATTGGACAGATTTGAACAAGATTATCATCGAAAGGTGGAGGAGCTGCAGTCCTTACACCTTCCTCAGAAAGGAGAGAGCCTATCGATTTTACAA AGTGAGTTGAAAGAACAACGAAAGCTTGTCCGGAGCTTGAAAAAGAGATCTCTTTGGTCTAAAAGTTTAGAGGAGATCATGGAGAAACTTGTTGATATTG TCACCTATGTGCACCAAGCTATCCTGGAAGCATTTGGAAATAGTGGAGTAACCGTGGCCGTTGATGAACCAGCCAACCATCAGAGGCTTGGAAAAGCTGG TCTAGCATTGCATTATGCTAACATGATCACCCAGATAGATAATATTGCATCTCGTCCCACCAGTCTTCCTCCCAATACAAGGGACTCATTATACCGTGGG TTGCCGCCGAGTGTCAAAACATCTCTACGTTCCAGGTTGCAGACATTTGACGACAAGGAAGAGCTTACCATAACTCAAGTAAAAGCTGAAATGGAGAAGA CTCTTCAATGGCTTGTACCTGTTGCCGCCAACACAACCAAAGCACACCAAGGTTTCGGCTGGGTTGGAGAATGGGCTAGTAACACTGGAAGCGACTATGG GAAGACTAACACAACCGCCCAAGGCAACCTGATCCGACTGCAAACCCTCTACCACGCGGATAAGGAGAAAACCGACAAACAGATCCTGGAAACAGTGGCA TGGCTTCACCGGCTGATCAATTTAGTGAGACAACGGGACAATGGCCTGCATACTGGAGGCTTGGCATTGAAGTCTGCAACTTATAGAGGACAGGATCTTC ACTCGAAGATGCAGCAGCAACACGTGGCGCTAAACCAAACCAGAAAGCCACACATTCCTCGACTGTCGGAAGAGGACAGAGACTTGTTAAACAAGGTGAG CCGTAAAAGGTTGATTCCTGGGATAAGTAAAAGTCAGGAATTTAATAAGAGCGGAAGAAGATGGGCATCATTGAGTAGGAATAAGAGCACCGGAACATCT CCTGCTAAAGAGATGGGGAGGAGGAGGAAAATGGTGCACCAACCCAGAGGGAACCTGTTGGACATTTTGGATGGCTTGCATTCCATTGTGTAA
AA sequence Show only first row Show all	>Lus10017260 pacid=23165743 polypeptide=Lus10017260 locus=Lus10017260.g ID=Lus10017260.BGIv1.0 annot-version=v1.0 MGAVCAGGVKKDANAKPAQVKRFSGKLAKPHKSLAKELDNSSGAKMNKNKNKNKKQTTTMQQERNYSGELLLSVSRELKPSKPAAEGPPAKVTHKTSFLG KAGTMGLEKTLEVLDTLGSSMSNLNARSGFISGMPSRGNKISILAFEVANTISKGANLFQSLSEENVNFLTKEILHSEGVKQLVSTDMKELLAIAASDKR EEFDVFSREVIRFGDLCKDPQWHNLGRYFPRLDAELSTDRLSREEAELTVHELTTLVQHTSELYHELHSLDRFEQDYHRKVEELQSLHLPQKGESLSILQ SELKEQRKLVRSLKKRSLWSKSLEEIMEKLVDIVTYVHQAILEAFGNSGVTVAVDEPANHQRLGKAGLALHYANMITQIDNIASRPTSLPPNTRDSLYRG LPPSVKTSLRSRLQTFDDKEELTITQVKAEMEKTLQWLVPVAANTTKAHQGFGWVGEWASNTGSDYGKTNTTAQGNLIRLQTLYHADKEKTDKQILETVA WLHRLINLVRQRDNGLHTGGLALKSATYRGQDLHSKMQQQHVALNQTRKPHIPRLSEEDRDLLNKVSRKRLIPGISKSQEFNKSGRRWASLSRNKSTGTS PAKEMGRRRKMVHQPRGNLLDILDGLHSIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30755			Protein of unknown function (D...		Lus10017260 [exp]	0	1
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10035262 [exp]	1.4	0.9027
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10024310 [exp]	5.5	0.8721
AT4G36500			unknown protein		Lus10014291 [exp]	6.0	0.8975
AT1G30755			Protein of unknown function (D...		Lus10013554 [exp]	6.5	0.9147
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10001265 [exp]	7.2	0.8893
AT1G56240		ATPP2-B13	phloem protein 2-B13 (.1)		Lus10031471 [exp]	11.8	0.8752
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	13.7	0.8568
AT1G76070			unknown protein		Lus10034552 [exp]	14.7	0.8346
AT1G16670			Protein kinase superfamily pro...		Lus10042460 [exp]	15.0	0.8667
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10023838 [exp]	15.2	0.8394

Compare expression of checked genes

Lus10017260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.