Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17880 103 / 2e-28 Chaperone DnaJ-domain superfamily protein (.1) AT4G36040 101 / 1e-27 J11 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) AT3G13310 84 / 9e-21 Chaperone DnaJ-domain superfamily protein (.1) AT4G13830 72 / 3e-16 J20 DNAJ-like 20 (.1.2) AT4G39960 66 / 4e-13 Molecular chaperone Hsp40/DnaJ family protein (.1) AT4G37480 66 / 8e-13 Chaperone DnaJ-domain superfamily protein (.1) AT2G22360 64 / 3e-12 DNAJ heat shock family protein (.1) AT1G59980 63 / 5e-12 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT2G21510 62 / 9e-12 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G39150 60 / 6e-11 DNAJ heat shock N-terminal domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013558 [exp] 154 / 2e-49 AT4G36040 82 / 1e-21 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10041906 [exp] 109 / 7e-31 AT4G36040 144 / 8e-45 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10028453 [exp] 106 / 2e-29 AT2G17880 146 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1) Lus10034484 [exp] 89 / 3e-23 AT4G36040 100 / 3e-28 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10025060 [exp] 86 / 3e-22 AT4G36040 102 / 7e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10032957 [exp] 86 / 1e-21 AT3G13310 109 / 2e-31 Chaperone DnaJ-domain superfamily protein (.1) Lus10002355 [exp] 86 / 3e-21 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10003150 [exp] 82 / 2e-19 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2) Lus10002356 [exp] 77 / 1e-17 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G020800 [exp] 173 / 8e-56 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G240700 [exp] 167 / 2e-53 AT2G17880 105 / 2e-29 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020700 [exp] 165 / 1e-52 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.004G172300 [exp] 115 / 2e-33 AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.009G131800 [exp] 109 / 1e-31 AT2G17880 109 / 9e-32 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G113100 [exp] 106 / 9e-30 AT2G17880 139 / 6e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G469600 [exp] 89 / 9e-23 AT3G13310 120 / 4e-35 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G166500 [exp] 86 / 3e-21 AT3G13310 115 / 4e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G001301 [exp] 83 / 2e-20 AT3G13310 102 / 2e-28 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G107600 [exp] 78 / 8e-19 AT3G13310 109 / 4e-31 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10017263 pacid=23165811 polypeptide=Lus10017263 locus=Lus10017263.g ID=Lus10017263.BGIv1.0 annot-version=v1.0 ATGGCTTTCACGTCTTCTTTTCTCTGCTCCTCCTCCTCATCTTCTTCTTCTCTAATCGTTCCGAATCTCGATCACAGGGCCACTTCGTTTCCTTCGCCTT CCCGGGTCGGGCTCCGGCCGCTTCGCGTCTCCGCTTCTTGCGCGGCTACCGCCGAGAGGGGAACCAGCACGATGACGACGGCGGCGGCGCGTCGACGGTC TTCCTTTTATGAGGTGCTGGGGATTCAGACGGGCGCCACGTGTCAGGAGATCAAGGCCGCTTACAGACAAATGGCAAGAGTCCTCCACCCGGACGTTGCC GCCGGCGAGGATGACAGTACCGCGAGCGAGTTCATTAAATTGCACGAGGCGTACGAAACGCTTTCAGATCCGGAGAAACGGGCGGATTACGACCGGACTC TGTTCTGGGTGGGGCGGTCATTGAGCTATGCGTTTGTGATGTCGCCTGCTGCGTCGGGTTCGGGTCAGTCCGGGTACACTAGCCGAAGATGGGAAACGGA TCAGTGCTGGTAG
AA sequence Show only first row Show all	>Lus10017263 pacid=23165811 polypeptide=Lus10017263 locus=Lus10017263.g ID=Lus10017263.BGIv1.0 annot-version=v1.0 MAFTSSFLCSSSSSSSSLIVPNLDHRATSFPSPSRVGLRPLRVSASCAATAERGTSTMTTAAARRRSSFYEVLGIQTGATCQEIKAAYRQMARVLHPDVA AGEDDSTASEFIKLHEAYETLSDPEKRADYDRTLFWVGRSLSYAFVMSPAASGSGQSGYTSRRWETDQCW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10017263 [exp]	0	1
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10013558 [exp]	3.5	0.7780
AT2G27930			PLATZ transcription factor fam...		Lus10036044 [exp]	10.4	0.7761
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10036827 [exp]	12.5	0.7251
					Lus10009372 [exp]	12.6	0.7443
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	14.6	0.7443
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	16.3	0.7443
					Lus10001325 [exp]	17.7	0.6960
					Lus10000400 [exp]	17.8	0.7443
AT4G29280		LCR22	low-molecular-weight cysteine-...		Lus10015983 [exp]	19.3	0.7443
AT4G38260			Protein of unknown function (D...		Lus10012254 [exp]	20.0	0.5674

Compare expression of checked genes

Lus10017263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.