Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24175 159 / 8e-47 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013559 [exp] 341 / 3e-118 AT4G24175 201 / 9e-63 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G240800 [exp] 205 / 8e-65 AT4G24175 235 / 3e-76 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04751 [flax] [poplar] DUF615 Protein of unknown function (DUF615)
Representative CDS sequence Show only first row Show all	>Lus10017264 pacid=23165763 polypeptide=Lus10017264 locus=Lus10017264.g ID=Lus10017264.BGIv1.0 annot-version=v1.0 ATGGCTAGACTGATACGGCCACTGAGGCAACAATGGCCGCAGCTCCTTCACCACCACCGTTTTTGCAGCTATCATCATTCTTCCTTCATTCACCTCCTCA CTTCTTCATCTTTAACGATAAGCTGCTCCTCAACAGCCAATCCACATCATGTCTTCCCCTTGGCTACTTCCAGCTCCTCTCACCGTAGCTTCCACACGTG GGTTCGCCGTCCTAGATTCACCGAGGTCCCAACTTCAGTCGAAGAGGAGGAAGGCGAGATCGGAATTGATTCTGATTCTGACGCGAAGAAGAGCCGCAAC GAGAAGAAACGCGAGGCTCGTCGCGCTGTCCGTTGGGGAATGGAGCTCGCTGCTTTCTCTCCGCCTCAAATTAAACGAATCCTCAGGCTAGCTTCGCTGG AACGAGAGGTGTATGAAGGTTTAATGCTAGTTAAGAAATTTGGGCCTGACGTCAAAGAAGGGAAGCGAAGGCAATACAACTATATAGACCAGTCCGTTGG CTCTGGTTGTTACATTGCTGTTCGTTCTATGCTTGGAAATCAGTTTAGTGAGAGAAATGTTGTTGGACACACAGGGAAGCTACTTCGTGATGTACAACCT GACCTAATGGATGCCTTAATTCACTCAACGAAAGATGGGGACTGGAGTCGGCTCAAGGATATTTCTGGTTTGGAAGTGCAGATTGACGGAGATGATGCCA AAGAAATTGAAGAAAAGTTTGAAGAGGAAGAGGTTTCTGAAGAGCACCTGGAGATGGCAACCAGATGGTTGGATGGTCTCATCACCAAGGACGTTGACAT AACTAAAGAAGTGTATGCAGTCCCTGTGATTGATTTTGACCGTCAGGCAAGTTAA
AA sequence Show only first row Show all	>Lus10017264 pacid=23165763 polypeptide=Lus10017264 locus=Lus10017264.g ID=Lus10017264.BGIv1.0 annot-version=v1.0 MARLIRPLRQQWPQLLHHHRFCSYHHSSFIHLLTSSSLTISCSSTANPHHVFPLATSSSSHRSFHTWVRRPRFTEVPTSVEEEEGEIGIDSDSDAKKSRN EKKREARRAVRWGMELAAFSPPQIKRILRLASLEREVYEGLMLVKKFGPDVKEGKRRQYNYIDQSVGSGCYIAVRSMLGNQFSERNVVGHTGKLLRDVQP DLMDALIHSTKDGDWSRLKDISGLEVQIDGDDAKEIEEKFEEEEVSEEHLEMATRWLDGLITKDVDITKEVYAVPVIDFDRQAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24175			unknown protein		Lus10017264 [exp]	0	1
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10035646 [exp]	3.6	0.9415
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10027180 [exp]	6.3	0.9235
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10010370 [exp]	9.2	0.9331
AT5G13100			unknown protein		Lus10037045 [exp]	9.7	0.8835
AT5G10920			L-Aspartase-like family protei...		Lus10032846 [exp]	13.2	0.9236
AT5G12260			unknown protein		Lus10036072 [exp]	15.9	0.8867
AT4G14910		HISN5B, IGPD	HISTIDINE BIOSYNTHESIS 5B (.1....		Lus10041717 [exp]	16.6	0.8266
AT1G24360			NAD(P)-binding Rossmann-fold s...		Lus10036980 [exp]	17.6	0.9141
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10010321 [exp]	18.0	0.8821
AT3G20330		PYRB	PYRIMIDINE B (.1)		Lus10013346 [exp]	20.4	0.9201

Compare expression of checked genes

Lus10017264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.