Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75800 390 / 1e-136 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 368 / 5e-128 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38670 322 / 2e-110 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT4G36010 318 / 2e-108 Pathogenesis-related thaumatin superfamily protein (.1.2) AT2G17860 301 / 1e-102 Pathogenesis-related thaumatin superfamily protein (.1) AT4G24180 280 / 3e-94 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT4G38660 282 / 9e-94 Pathogenesis-related thaumatin superfamily protein (.1.2) AT5G38280 287 / 1e-91 PR5K PR5-like receptor kinase (.1) AT1G19320 251 / 6e-83 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75050 248 / 8e-82 Pathogenesis-related thaumatin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034534 [exp] 478 / 4e-171 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033136 [exp] 461 / 2e-164 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 305 / 1e-103 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 301 / 8e-102 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013560 [exp] 295 / 3e-99 AT1G75800 173 / 6e-70 Pathogenesis-related thaumatin superfamily protein (.1) Lus10013561 [exp] 295 / 6e-99 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 293 / 2e-98 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10036435 [exp] 291 / 5e-92 AT4G38670 417 / 7e-139 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Lus10023897 [exp] 273 / 2e-91 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G020500 [exp] 429 / 5e-152 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G240900 [exp] 428 / 2e-151 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112700 [exp] 342 / 5e-118 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132200 [exp] 300 / 3e-101 AT4G38670 410 / 2e-145 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Potri.004G014574 [exp] 291 / 1e-98 AT1G75800 294 / 8e-100 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G241000 [exp] 293 / 2e-98 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.009G132500 [exp] 285 / 6e-95 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.004G173200 [exp] 284 / 1e-94 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.002G020400 [exp] 282 / 5e-94 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G112600 [exp] 281 / 9e-94 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10017265 pacid=23165790 polypeptide=Lus10017265 locus=Lus10017265.g ID=Lus10017265.BGIv1.0 annot-version=v1.0 ATGGCTCCTCTGAATCCCCAATTCCTGATGATCCTATCCTTTTTCGTAGCTTATTTCATCTGCCAATCCGCCGTCGTCGTATCATCCACGACTTTCACAA TCACCAACCAGTGCGACTACACGGTGTGGCCGGGCATTCTCTCCAACGCCGACGCTCCACTGCTCTCCACCACAGGTTTCCCTCTCCAGAAAGGCGAGAC CCGATCCATATCCCCTCCGGCTTCTTGGGGCGGCCGCCTCTGGGGTCGGACTCACTGCTCCCAGGACTCCGCCGACGGAAAATTCTCCTGCCTCACCGGC GATTGTGGCTCCGGTAAGATTGAGTGCTCCGGCAGCGGCGCCATCCCGCCTGCGACCCTTGCCGAGTTCAAGCTCGATGGATACGGCGGCCAAGATTTCT TCGACGTCAGCCTCGTCGATGGATACAACCTCCCCATTCTCGTGTCCCCTAGCGGCGGTTCCGGCCAGAACTGCTCAAACACGGGCTGCGTTGTGGATCT GAACGGCGCGTGTCCTTCCGACCTCAAGGTTACCAGCGCGGCCGGCGAGGGCGTGGCTTGCAAGAGCGCGTGCGAAGCGTTTCAGAAGCCGGAGTACTGC TGCAATGGAGCTTACGCGACTCCCGATACGTGTAAGCCGTCATCTTACTCGTTGGCCTTCAAGAGTGCCTGTCCACGCGCTTATAGCTACGCGTACGATG ATAAGACCAGCACCTTTACCTGTACTTCTGCATATAATTACGCCATCACCTTCTGCCCCACTCCCAACTCCAGTCAGAAGGCGTCCCAGGAGCAAAACCA AACCCAGGATACCAATCCAAACGGGAACGACGGCGTAGGGAACGGTTCGCCGTCTGTTGACGGGAGGATGGTATACGAAGGAAGCGCATTTGACGAGAGC CGTGGGATGTCGACAACGTGTAGCCACGTGATGGGAACAGTGAGCATCACATTGGCCATTTGGCGGTTGATGCAGAATTTTTCATGA
AA sequence Show only first row Show all	>Lus10017265 pacid=23165790 polypeptide=Lus10017265 locus=Lus10017265.g ID=Lus10017265.BGIv1.0 annot-version=v1.0 MAPLNPQFLMILSFFVAYFICQSAVVVSSTTFTITNQCDYTVWPGILSNADAPLLSTTGFPLQKGETRSISPPASWGGRLWGRTHCSQDSADGKFSCLTG DCGSGKIECSGSGAIPPATLAEFKLDGYGGQDFFDVSLVDGYNLPILVSPSGGSGQNCSNTGCVVDLNGACPSDLKVTSAAGEGVACKSACEAFQKPEYC CNGAYATPDTCKPSSYSLAFKSACPRAYSYAYDDKTSTFTCTSAYNYAITFCPTPNSSQKASQEQNQTQDTNPNGNDGVGNGSPSVDGRMVYEGSAFDES RGMSTTCSHVMGTVSITLAIWRLMQNFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75800			Pathogenesis-related thaumatin...		Lus10017265 [exp]	0	1
AT1G75800			Pathogenesis-related thaumatin...		Lus10013560 [exp]	1.0	0.8735
AT3G15518			unknown protein		Lus10037893 [exp]	7.2	0.7983
AT1G76600			unknown protein		Lus10037249 [exp]	8.2	0.8075
AT1G18210			Calcium-binding EF-hand family...		Lus10009059 [exp]	9.0	0.8030
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10036571 [exp]	13.0	0.7911
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10039331 [exp]	15.0	0.7848
AT5G54400			S-adenosyl-L-methionine-depend...		Lus10037890 [exp]	16.7	0.7211
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10026082 [exp]	17.9	0.7978
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10028285 [exp]	19.3	0.7285
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10024372 [exp]	21.2	0.7711

Compare expression of checked genes

Lus10017265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.