Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75820 1231 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 960 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 932 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 821 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 640 / 0 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT1G08590 600 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 592 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G28440 576 / 0 HSL1 HAESA-like 1 (.1) AT4G28490 556 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 551 / 9e-180 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013562 [exp] 1763 / 0 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039641 [exp] 926 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 924 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011576 [exp] 868 / 0 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10036242 [exp] 833 / 0 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10037358 [exp] 816 / 0 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10035783 [exp] 704 / 0 AT5G65700 857 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10038930 [exp] 640 / 0 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10027221 [exp] 639 / 0 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G241500 [exp] 1325 / 0 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 1297 / 0 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G009200 [exp] 943 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G073600 [exp] 892 / 0 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 881 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G223900 [exp] 820 / 0 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.003G107600 [exp] 672 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.001G126100 [exp] 652 / 0 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.019G021700 [exp] 637 / 0 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 632 / 0 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017267 pacid=23165820 polypeptide=Lus10017267 locus=Lus10017267.g ID=Lus10017267.BGIv1.0 annot-version=v1.0 ATGAGGGTTTCACTATTCTCCATTGTTCTTCATCTCCTTCTCCTGTCCACTGCTTCCAATGGCAGCGACCTCCAACTACTTTTGAAGCTCAAATCGGCCA TGACCGGACCCAAAGGCACCGGCCTGGAAGATTGGCAACAGCCTACACCCTTCTCTCCTTCCGCTCATTGCTCCTTCTCCGGAGTTACCTGCGACAAGGA CTCACGTGTAGTATCTCTCAACGTCTCATCTCGCCGCCTGTTTGGCTCCATCCCGCCGGAGATTGGACTGTTGGATCGGCTCGTGAACCTCACCATTCCT TCAGATAACCTCACCGGCGGACTTCCTCTGGAGATGTCCAAGCTAGCTTGTCTCAGGACGCTCAACGTCTCCAACAATAATTTCACCGGGAATTTCCCAG GAGAGATTGTTCTAGGGATGCCTCTGCTTGAAATCCTTGACGTTTACAACAACAATTTCTCCGGTCCCTTGCCGGTGGAGGTCTCCAAGTTGAAGAATCT GAAGCACCTCCATCTCGGCGGGAACTATTTCTCCGGGACGATACCAGAGGCCTACTCCGAGATTGAAAGCTTGGACTATTTGGGGCTCAACGGCAACGGC CTCTCTGGTAAGGTTCCGGCGATTTTGGCGAAGCTTAGTAATCTCAAGAGCTTGTACTTGGGGTATTTCAACTTGTACGAAGGCGGAATCCCGCCGCAGT TTGGGCTGTTGAGTAGCCTGGAGGTGTTGGACATGGCGAGCTGCAACCTTAGCGGCGAAATTCCCAGGACCTTGAGTCGATTGACGCAGCTCAACAGTCT GTTCCTCCAAATGAACCATTTATCAGGTCACATTCCCCCTGATTTCTCTGCTTTGGTTGGTTTGAAGTCTCTGGATCTTTCCCTCAACGAGCTCACCGGT GAGATTCCTTCTGGGTTTTCTTCCTTGACCAAAATCACTCTCATTAACGCCTTCAAGAACAACCTGTACGGCCCCATCCCGGAGTTCCTCGGCGACTTCC CCGATCTTGAGGTTCTTCAACTTTGGGGAAATAATTTCACTGTTCAACTCCCGGCGAAGCTAGGCCAGAGTGGGAAGCTGAAGCTTCTCGATGTTTCTTT CAATCATCTCACTGGTTCTATACCTAAGGATTTATGCAAAGGAGCGAAATTAGAGTCTCTAATTCTCATGAACAATTTCTTCATTGGATCGCTTCCAGAC GAGCTCGGCCCCTGCAAATCATTGACGAAATTCCGAGTTGCGAATAACATGCTCAGCGGGCCGATTCCCGCCGGAATCTTCAACTTGCCGGCGTCCACTA TTGTGGAACTAAGCAACAACTATTTCTCGGGCAAGCTCCCGTCTGAGATGTCTTCGCCGCAGCTCGGCCATCTCACAGTTTCCAACAACCGGATCGAAGG TGAAATCCCTCCAGCTATCGGCAACTTAGCTAACCTACAGATCTTATCCCTCGACACCAACAGATTCTCCAGCAAAATTCCGGCTGAGGTATTCAATCTC AGGCGTCTTTCAGTGATCAATGTCAGCGCCAATAACCTGACAGGCGAAATCCCGAACTCAATCTCTCTTTCCTCGTCGTTAACATCGGCGGATTTCAGTC GGAACCAACTCACCGGCGAGATCCCGAAAGCCATTACAGAGCTCGAGGTTTTAAGTATTCTCAATCTCTCCCGTAATCATCTCACCGGAAACATTTTAGT GGATATCCGAAACATGACGAGCCTCACCAAGCTGGATCTATCTTACAACAATCTGAGAGGCAGAATCCCTTCTGGCGGCCAGTTTCTCGTGTTTGGCGAT AGTGCCTTCGCCGGGAACCCTAATCTCTGTCCATCGAGGGAAGTCTCCTGCCCGTCTTTTTCCGATTCCACCGAATCATCAAACCGCCATAAGCCGTCGT TTTCATCATCCGATCTTATAATCACGGTGGTCGTGGTTCTCTCCGTCTTGGTATCATGCGTGGTCGCATTCTTCATGAGGAAGAAGAACCGCCGCAATTC ACGGGCGTGGAAGCTCACAGCGTTCCAGAGGCTGGATTTCAAAGCAGAGGACGTCGTAGAGTGCTTGAAGGAAGAGAACATAATAGGTAAAGGTGGCGCC GGAACAGTGTACCGCGGATCGATGCCAGACGGCATCGACGTGGCGATAAAGCGCCTGGTCGGCGCTCGCGGGACGGGGAGGAGCGACCACGGGTTCTCGG CGGAGATCCAGACGCTGGGGAAAATCCGGCACCGGAACATCGTCCGGTTGTTGGGACACGTTTCGAACAAGGACACGAACTTGCTGCTGTACGAATTCAT GCCGAACGGGAGCTTGGGTGAGTTGCTCCATGGGTCAAAAGGAGGGCAGTATTTGCAGTGGCAGACGAGGTACAGGATCGCAGTGGAAGCTGCCAAAGGA TTGTGCTATCTTCACCATGACTGCTCTCCTTTGATCATCCATCGTGATGTGAAATCCAACAACATATTGCTTGATTCTGACTTCGAGGCTCACGTTGCCG ATTTCGGACTCGCCAAGTTTTTACAGGATGCTGGAGCTTCAGAGTGCATGTCCTCCATCGCAGGCTCCTACGGCTACATCGCACCCGAATATGCATACAC GTTAAAGGTGGACGAGAAGAGCGACGTGTACAGCTTCGGGGTGGTGTTGCTGGAGTTAATAGCGGGGAGGAAGCCGGTGGGGGAGTTTGGAGATGGGGTG GACATAGTAAGGTGGGTGAGGAAGACGACGACGGAGCTGCCTCAGCCGTCGACGGAGGCAGCTTCGGTGTTGGCAGTGATTGATCCTAGGTTGAGTGGGT ACGCAGTGACAGGTGTCATCCATCTGTTCAAGATAGCTATGATGTGCGTTGAAGATGAGAGCTCGGCTAGGCCTACGATGAGGGAAGTGGTTGACATGTT GACTAATCATTCCCCGCAGTCTTCTCTTCCGGACTTGGTGGCTCTTTGA
AA sequence Show only first row Show all	>Lus10017267 pacid=23165820 polypeptide=Lus10017267 locus=Lus10017267.g ID=Lus10017267.BGIv1.0 annot-version=v1.0 MRVSLFSIVLHLLLLSTASNGSDLQLLLKLKSAMTGPKGTGLEDWQQPTPFSPSAHCSFSGVTCDKDSRVVSLNVSSRRLFGSIPPEIGLLDRLVNLTIP SDNLTGGLPLEMSKLACLRTLNVSNNNFTGNFPGEIVLGMPLLEILDVYNNNFSGPLPVEVSKLKNLKHLHLGGNYFSGTIPEAYSEIESLDYLGLNGNG LSGKVPAILAKLSNLKSLYLGYFNLYEGGIPPQFGLLSSLEVLDMASCNLSGEIPRTLSRLTQLNSLFLQMNHLSGHIPPDFSALVGLKSLDLSLNELTG EIPSGFSSLTKITLINAFKNNLYGPIPEFLGDFPDLEVLQLWGNNFTVQLPAKLGQSGKLKLLDVSFNHLTGSIPKDLCKGAKLESLILMNNFFIGSLPD ELGPCKSLTKFRVANNMLSGPIPAGIFNLPASTIVELSNNYFSGKLPSEMSSPQLGHLTVSNNRIEGEIPPAIGNLANLQILSLDTNRFSSKIPAEVFNL RRLSVINVSANNLTGEIPNSISLSSSLTSADFSRNQLTGEIPKAITELEVLSILNLSRNHLTGNILVDIRNMTSLTKLDLSYNNLRGRIPSGGQFLVFGD SAFAGNPNLCPSREVSCPSFSDSTESSNRHKPSFSSSDLIITVVVVLSVLVSCVVAFFMRKKNRRNSRAWKLTAFQRLDFKAEDVVECLKEENIIGKGGA GTVYRGSMPDGIDVAIKRLVGARGTGRSDHGFSAEIQTLGKIRHRNIVRLLGHVSNKDTNLLLYEFMPNGSLGELLHGSKGGQYLQWQTRYRIAVEAAKG LCYLHHDCSPLIIHRDVKSNNILLDSDFEAHVADFGLAKFLQDAGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGEFGDGV DIVRWVRKTTTELPQPSTEAASVLAVIDPRLSGYAVTGVIHLFKIAMMCVEDESSARPTMREVVDMLTNHSPQSSLPDLVAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10017267 [exp]	0	1
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035387 [exp]	3.5	0.8460
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10039671 [exp]	4.1	0.8471
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035386 [exp]	5.9	0.8402
AT4G18130		PHYE	phytochrome E (.1)		Lus10011967 [exp]	7.5	0.8448
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10013562 [exp]	7.9	0.8278
AT3G13620			Amino acid permease family pro...		Lus10034046 [exp]	8.1	0.8414
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040399 [exp]	10.8	0.8422
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10009820 [exp]	13.9	0.7978
AT4G13150			unknown protein		Lus10025925 [exp]	15.5	0.8406
					Lus10026102 [exp]	15.7	0.8351

Compare expression of checked genes

Lus10017267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.