Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27940 1494 / 0 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G28010 1452 / 0 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT3G28860 1141 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT4G25960 1107 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 1089 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT2G36910 1053 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT2G47000 925 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT4G18050 901 / 0 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT3G28390 899 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT1G02520 899 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017271 [exp] 2036 / 0 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10030674 [exp] 1127 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10005249 [exp] 1127 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10023929 [exp] 1085 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10004571 [exp] 959 / 0 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10038049 [exp] 898 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10009988 [exp] 895 / 0 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010068 [exp] 894 / 0 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10035834 [exp] 874 / 0 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G019600 [exp] 1590 / 0 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.017G081100 [exp] 1150 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.001G139600 [exp] 1118 / 0 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.003G094400 [exp] 1118 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.006G123900 [exp] 1077 / 0 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.016G093600 [exp] 1072 / 0 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.001G139700 [exp] 1062 / 0 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G354900 [exp] 909 / 0 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.010G003000 [exp] 901 / 0 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.017G085000 [exp] 887 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10017270 pacid=23165831 polypeptide=Lus10017270 locus=Lus10017270.g ID=Lus10017270.BGIv1.0 annot-version=v1.0 ATGGCAGAACCGGAGTACAACACCTCGAAACCCGACCAACTCAAGAAGCCTAGTACTGTGTCCTTCTTCCGTATGTTCTCTGCTGCAGACAAGGTAGACT ATGTGTTAATGTTCTTCGGAAGTTTCGGGGCTTGCGTCCATGGTGCTGCTATTCCTATGTTGTTCCTCTTGTTCGGTAATTTGATCGACTCGCTAGGAAG CCTGGCCTCAGATCCTCACAACATGTCTTCACAAATCTCCAAGAATGCATTGTACTTTGTTTACCTGGGGCTAGTTGTGTTTGCAGCGGCATGGATCGGT GTTGCATTCTGGATGCAAACTGGGGAAAGGCAGACAGCTCGGTTGCGGCTGAAGTATCTGCAGACAGTGCTGAAACAGGATATGAACTTCTTCGACACAG AAGCTAGAGATTCCAACATTATATTCCACATCTCCAGTGACACAATCCTGGTTCAAGATGCAATCGGTGATAAGACGGGGCATGCTCAACGTTACCTGAG TCAATTCATCGCCGGGTTCGCACTTGGATTTACATCAGTATGGCAATTGTCACTGCTAACCTTAGCGGTGGTTCCATTAATTGCCTTGGCTGGAGGAGCT TATACTATAATCATGACTAGTTTGTCTAAGAAAGGCGAGGTTGCCTATGCTGAAGCTGGCAAGATTGCAGAAGAGGTTATATCGCAAATTCGAACAATTT ACGCATTTGTTGGAGAGGACAAAGCTATCGAATCATACTCAAAATCCTTGAAGAAAGCGCTTAAATTAGGAAAGAAGAGCGGAGTAGCAAAAGGAGTTGG TGTTGGTCTCACTTACGCCTTGCTGTTTTCTGCCTGGTCATTGCTTCTTTGGTATTCCAGCATACTTATCAGGCACAAGAAAACTGACGGCGGAAAGGCA TTTTCCACTATTATCAATGTCATCTTCAGTGGATTTGCTCTTGGTCAAGCAGCTCCAAATCTTGCTGCAATAGCCAAAGGACGAGCAGCAGCAGACAGGA TAACTTCAATGATCGAATTATCAGGATCGAGCTCGGAGTCCTCGAAACGTTACGAAGCAAGATTAGTCATGTTGCCTAAGGTTTTGGGCGAGATTGAGTT TCGCGAGGTCTCTTTCGCTTACCCTTCAAGACCAGACAGTTTGGTATTTGAAAACCTGAGCTTCTTAATAAGTGCAGCGAAGACCTTCGCATTCGTCGGT CCAAGTGGTTCAGGAAAGAGCACTGTTATATCCATGGTTCAACGTTTCTATGATCCAATTTCAGGTAGAATCCTGCTAGATGGTCATGACATGAAGAGCC TGAGGTTGAAATGGCTCAGACAACAGATGGGTTTGGTGAGTCAAGAGCCAGCATTATTCGGGACAACGATATCCGAGAACATACTGTTCAGTAAAGAAGA TGCAAGCATGGAGCAGATTTTCCAAGCTGCAAAAGCTGCTAATGCTCACTCTTTCATTCAACAACTTCCTGATGGTTACAGCACTCAGGTTGGAGAAGGA GGCATTCAGCTCTCGGGAGGACAGAAGCAAAGGATAGCTATAGCAAGAGCAGTGCTTAGAAACCCAAAGATACTTCTCCTAGACGAGGCCACCAGTGCCC TCGACACGGAATCCGAACATGTAGTTCAGCAGGCACTTGACAAGATCATGTCGGATCGTACCACCATCGTGGTCGCTCATCGATTGTCCACAATCCGGAA TGTCAACACGATCATGGTCCTGAAACACGGTCAGGTCGTTGAAAGTGGTAGCCATTCAGATCTGATGTCGAAATTCGGGGAGTATGCAAGTTTTGTTAAA CTCCAGGTATCAGAAACCAGCAGTAACGACCCGAGCTCATTTAATGATTCTGCATCTATTGTTGGATCTAGCTTTCGCGAATCGTTGAACAGCCAACGAT TCTTGCCCGATTCGAAGGCAGGGCAATGCCCTCATTCGAGTGATGAGAAGTCGTCTGGTTCAATGTTACAACTCCTGAAGCTGAATGCACCGGATTGGCC TTACGCTGTTCTTGGTTCATTAGGTGCCATCCTGACAGGAATTGAAGCTCCTCTGTTTGCTTTAGGACTTTCCCATGTCCTATCAGCTTATTACTCCCCA AATATCAATGAAATGAAGCATGAAGTTAACAGAATTTCTCTGATTTTTGTGGCTTTAGCTGCCATCACAATTCCTAGTTACCTTCTCCAGCACTACTTCT ACACCGTGATGGGTGAACGCATCACCACTCGTGTTCGCTTATCGATGTTTAAGGCCATTCTATCCAACGAGATCGGGTGGTTCGATCTTGAGGAGAATAA CACAGGATCTCTGTCGTCGGCTCTTGCTGCGGAAGCCACCTTAGTAAGGAGTGCTGTTGCTGAACGTCTCTCGACGATTGTACAAAACTTGGCGCTGATC ATCACGGCTTGTGCCATTTCGTTCGCCTTTTGTTGGCGAGTTGCAGCTGTTGTGGTAGCCACATTTCCTCTCCTCCTTGGAGCCACCCTTGCTGAGCAAC TATTTCTCAAGGGGTTTGGAGGCGACTACCGATCCTACAGCAGGGCAAACTCCGTGGCTAGTGAAGGCATCGCCAACATCAGAACCGTAGCAGCATTCGG AGGGGAAGACAAGATTGCGTCGCAGTTCTCATTCGAGCTCAGCAAACCCAAAAGGCAAGCCTTCCTGAGAGGACATGTGTCAGGTTTCGGTTACGGCCTC TCGCTGCTACTTTCATTCTGTTCTTACGCTCTGGCTCTGTGGTACGCTTCCATTGTCATCAAGGACAAGCACACGAATTTCGGAGACGCCATGAAATCGT ACCTGATTCTAGTAGTCACCTCCTTTGGCACGGCCGAAACTTTGGCGATGGGCCCCGACATTGTCAAAGGTTCCCAGGCTCTAAGTTCAGTTTTCTCCAT CTTGAACAGGAAGACCGTTATTGAATACAACGTTGCAGGTTCCAAAATTGTGGAGCATGTCAAGGGAGATATCGAGTTCAGGAATGTGAGCTTTAGGTAC CCAGCAAGACCTGAAGTAACCATTTTTGACGGGCTGTGCCTGAAAGTCTCATCGGGGAATAGCCTAGCAATAGTGGGACGAAGTGGTTCAGGGAAAAGCA CTATCATCTCCCTCATTCTACGATTTTACGACCCGATTTCCGGATCCATCATGATTGACGGATCCGATATCAAGACACTAAACCTGAAATCATTAAGACA GAGGATAGGATTAGTCCAGCAGGAGCCAGCATTGTTCTCAACAACGATCTATGAAAACATCAAGTATGGAAACGATAGTGCATCAGAAATCGAAATAATG AAAGCTGCAAAAGCTGCAAACGTTCATGGGTTCATAAGCAGGATGCCTGAAGGTTACAAAACACACGTGGGCAATAAAGGAATCCAACTATCAGGTGGAC AGAAACAAAGGGTGGCCATTGCTAGAGCGATTCTAAAAGATCCTGCAATTCTTTTGTTGGACGAAGCAACGAGTGCATTGGACACGACATCTGAGAAATT GGTGCAGGTAGCTCTGGATAAGCTGATGGAAGGCCGGACCACGGTCTTTGTTGCCCACAGGCTTTCAACAGTTCGGGACTCAGACGCCATTGCGGTGATT CAGAATGGGAGAGTTGCTGAAATTGGGAGCCACGGGAAGCTGATGGGGAAACCTGGGAGTGTTTATAAACATTTGGTTAGTTTGCAACAGGAGAATGGTG CAGGGGGATAG
AA sequence Show only first row Show all	>Lus10017270 pacid=23165831 polypeptide=Lus10017270 locus=Lus10017270.g ID=Lus10017270.BGIv1.0 annot-version=v1.0 MAEPEYNTSKPDQLKKPSTVSFFRMFSAADKVDYVLMFFGSFGACVHGAAIPMLFLLFGNLIDSLGSLASDPHNMSSQISKNALYFVYLGLVVFAAAWIG VAFWMQTGERQTARLRLKYLQTVLKQDMNFFDTEARDSNIIFHISSDTILVQDAIGDKTGHAQRYLSQFIAGFALGFTSVWQLSLLTLAVVPLIALAGGA YTIIMTSLSKKGEVAYAEAGKIAEEVISQIRTIYAFVGEDKAIESYSKSLKKALKLGKKSGVAKGVGVGLTYALLFSAWSLLLWYSSILIRHKKTDGGKA FSTIINVIFSGFALGQAAPNLAAIAKGRAAADRITSMIELSGSSSESSKRYEARLVMLPKVLGEIEFREVSFAYPSRPDSLVFENLSFLISAAKTFAFVG PSGSGKSTVISMVQRFYDPISGRILLDGHDMKSLRLKWLRQQMGLVSQEPALFGTTISENILFSKEDASMEQIFQAAKAANAHSFIQQLPDGYSTQVGEG GIQLSGGQKQRIAIARAVLRNPKILLLDEATSALDTESEHVVQQALDKIMSDRTTIVVAHRLSTIRNVNTIMVLKHGQVVESGSHSDLMSKFGEYASFVK LQVSETSSNDPSSFNDSASIVGSSFRESLNSQRFLPDSKAGQCPHSSDEKSSGSMLQLLKLNAPDWPYAVLGSLGAILTGIEAPLFALGLSHVLSAYYSP NINEMKHEVNRISLIFVALAAITIPSYLLQHYFYTVMGERITTRVRLSMFKAILSNEIGWFDLEENNTGSLSSALAAEATLVRSAVAERLSTIVQNLALI ITACAISFAFCWRVAAVVVATFPLLLGATLAEQLFLKGFGGDYRSYSRANSVASEGIANIRTVAAFGGEDKIASQFSFELSKPKRQAFLRGHVSGFGYGL SLLLSFCSYALALWYASIVIKDKHTNFGDAMKSYLILVVTSFGTAETLAMGPDIVKGSQALSSVFSILNRKTVIEYNVAGSKIVEHVKGDIEFRNVSFRY PARPEVTIFDGLCLKVSSGNSLAIVGRSGSGKSTIISLILRFYDPISGSIMIDGSDIKTLNLKSLRQRIGLVQQEPALFSTTIYENIKYGNDSASEIEIM KAAKAANVHGFISRMPEGYKTHVGNKGIQLSGGQKQRVAIARAILKDPAILLLDEATSALDTTSEKLVQVALDKLMEGRTTVFVAHRLSTVRDSDAIAVI QNGRVAEIGSHGKLMGKPGSVYKHLVSLQQENGAGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27940		ABCB13, PGP13	ATP-binding cassette B13, P-gl...		Lus10017270 [exp]	0	1
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009621 [exp]	1.4	0.9304
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10007139 [exp]	4.6	0.8792
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10005762 [exp]	6.2	0.8821
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10006360 [exp]	8.7	0.8750
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009620 [exp]	9.5	0.8510
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10018047 [exp]	10.0	0.8668
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10019971 [exp]	10.5	0.8344
AT2G37010		ATNAP12	non-intrinsic ABC protein 12 (...		Lus10023199 [exp]	11.5	0.8608
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10037294 [exp]	11.7	0.8534
AT4G11780			unknown protein		Lus10024488 [exp]	13.1	0.8438

Compare expression of checked genes

Lus10017270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.