Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27940 1553 / 0 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G28010 1511 / 0 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT3G28860 1200 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT4G25960 1159 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 1151 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT2G36910 1088 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT2G47000 952 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT1G02520 922 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT3G62150 914 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT3G28380 910 / 0 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017270 [exp] 2066 / 0 AT1G27940 1686 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10005249 [exp] 1180 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10030674 [exp] 1178 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10023929 [exp] 1125 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10004571 [exp] 1005 / 0 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10038049 [exp] 930 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10009988 [exp] 925 / 0 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10039458 [exp] 920 / 0 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10005839 [exp] 916 / 0 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G019600 [exp] 1640 / 0 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.017G081100 [exp] 1205 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.003G094400 [exp] 1158 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139600 [exp] 1153 / 0 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.006G123900 [exp] 1115 / 0 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.016G093600 [exp] 1111 / 0 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.001G139700 [exp] 1097 / 0 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.010G003000 [exp] 943 / 0 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.001G354900 [exp] 942 / 0 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.014G113500 [exp] 924 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10017271 pacid=23165773 polypeptide=Lus10017271 locus=Lus10017271.g ID=Lus10017271.BGIv1.0 annot-version=v1.0 ATGGCAGAACTGGAGCAGAACACTACTTCACCTCTCGGTGAGAAACCCGACCAACTCAAGAAGCCTAGTAGTGTGTCCTTCTTCCGTATGTTCTCTGCTG CAGACAAGGTGGACTATGTGTTAATGTTCTTTGGAAGTGTCGGGGCTTGCGTCCATGGCGCTGCACTTCCAATATTGTTCCTCTTGTTCGGTAATTTGAT CAATTCGATAGGAGACATGGCCTCAAATCCTCACCAACAGTTGACTTCAAGGATCTCCAAGAATGCCTTGTACTTTGTATACCTGGGGCTAGTTGTTTTT GCAGCGGCATGGATGGGTGTTGCATTCTGGATGCAAACTGGGGAAAGGCAGACAGCTCGGTTGCGGCTGAAATATCTGCAGACAGTGCTGAAACAGGACA TGAACTTCTTCGACACAGAAGCTAGAGATTCCAACATTATATTCCACATCTCCAGTGACACAATCCTTGTTCAAGATGCAATCGGTGATAAGACAGGGCA TGCTCTACGTTACCTGAGTCAATTCATCGCCGGGTTCGCACTTGCATTTACATCAGTATGGCAACTGTCACTGCTAACCTTAGCCGTGGTTCCCGTAATT GCTTTTGCTGGAGGAGCTTATGCTATAACCATGACTACTTTGTCTGAGAAAGGAGAGTTTGCCTATGCTGAAGCTGGCAAGATTGCAGAAGAGGTTATAT CACAAATTCGAACAATTTACGCATTTGTTGGAGAGGACAAAGCTATCGAATCATACTCGAAATCCTTGAAGAAAGCGCTTAAATTAGGAAAGAAGAGCGG AGTAGCAAAAGGAGTTGGTGTTGGTCTCACTTACGCCTTGCTGTTTTCTGCCTGGTCATTGCTTCTTTGGTATTCCAGCATACTTATCAGGCACAAGAAA ACTGACGGTGGAAAGGCATTTTCCACTATTATCAATGTCATCTTCAGTGGATTTGCTCTTGGTCAAGCAGCTCCGAATCTTTCTGCAATTTCCAAAGGGC GAGCAGCAGCAGCCAGCATACTCGCTATGATTGAATCAGGATCAAGCTCGGAGTCCTCAAAACCTTATGAAGCTGGATTAGTCATGTTGCCTAATGTTTC AGGGGAGATTGAGTTTTGTGAGGTCTCTTTCGCTTACCCTTCAAGACCAGACAGTTTGGTATTTGAAAACCTGAGCTTCTTAATAAGTGCAGCGAAGACC TTCGCATTCGTCGGTCCAAGTGGTTCAGGAAAGAGCACTATTATATCCATGGTTCAACGTTTCTATGATCCAATTTCAGGTAGAATCCTGCTAGATGGTC ATGACGTGAAGAGCCTGAGGTTGAAATGGCTCAGACAACAGATGGGTTTGGTGAGTCAAGAGCCAGCATTATTCGGGACAACGATATCCGAGAACATACT GTTCAGTAAAGAAGATGCAAGCATGGAGCAGATTTTCCAAGCTGCAAAAGCTGCTAATGCTCACTCTTTCATTCAACAACTTCCTGATGGTTACAGCACT CAGGTTGGAGAAGGAGGCATTCAGCTCTCGGGAGGACAGAAGCAAAGGATAGCTATAGCAAGAGCAGTGCTTAGAAACCCAAAGATACTTCTCCTAGACG AGGCCACCAGTGCCCTCGACACGGAATCCGAACATGTAGTTCAGCAGGCACTTGACAAGATCATGTCGGATCGTACCACCATCGTGGTCGCTCATCGACT GTCCACAGTCCGGAATGTTGACACAATCATGGTCCTGAAGCACGGTCAGGTCGTTGAAAGTGGTAGCCATTCAGATCTCATGTCAAAATCCGGGGAGTAT GCAACTTTGGTTAGACTCCAGGCATCAGAAACCAGCTCTAACTCATTTAATGATTCTGCATCTATTGTTGGAGCTAGCTTCCGCGAATCATTCAACAGCC AACGATCCTTGCCCGATTCGAAGTCAGGGCAAGGCCCTCATTCGAGTGACGAAAAGTCATCTGGTTCAATGTTACAACTCCTGAAGCTGAATGCACCGGA TTGGCCTTATGCTGTTCTTGGTTCATTAGGTGCCATCCTGACAGGAATTGAAGCTCCTCTGTTTGCCTTGGGACTTTCCCATGTCCTTTCAGCTTATTAC TCTCCAAATATGAATGAAATGAAGAATGAGGTTAATAGAGTGGCTCTGATGTTTGTGGCTTTGGCAGCCATCTCAATTCCTACTTACCTTCTCCAACATT ATTTCTACACCGTGATGGGCGAACTGGTCACGACTCGCGTTCGCTTATCTATGTTTAAGGCTATTCTATCAAACGAGATTGGATGGTTCGATCTCGAGGA GAACAACACAGGATCTCTGTCGTCAGCTCTTGCTGCAGAAGCCACTTTAGTAAGGAGTGCTGTTGCTGAACGTCTCTCAACGATTGTTCAAAATTTGGCG CTGATCGTCACAGCTTGTTCCTTATCGTTCGCCTTATGTTGGCGAGTTGCAGCTGTTGTGGTAGCCACATTTCCTCTCCTCCTTGGAGCCACCCTAGCTG AGCAACTATTTCTCAAGGGGTTTGGAGGCGACTACAGATCCTACAGCAGGGCAAACTCAGTGGCTAGTGAAGGCATTGCCAACATCAGAACAGTTGCCGC ATTCGGAGGGGAAGACAAGGTTGCGTCGCAGTTCTCATTCGAGCTAAGCAAACCAAAGAAGCAAGCCTTCCTAAGAGGACACGTGTCAGGTTTCGGATAC GGCCTCTCCCAGCTGCTTTGCTTCTCTTCTTACGCTCTGGGTCTATGGTATGCTTCCGTTGTCATCAAGGAGAAGCACTCGAGTTTCGGGCACGCCATGA AATCGTTCCTGATTCTAGTAGTCACCTCCTTCGGCATGGCCGAAACTTTGGCATTGGCCCCCGACATTGTCAAAGGTTCCCAGGCTCTGGGTTCGGTTTT CTCCATCTTGAATAGGAAGACCACCATTGAAAACAACGTTGGAGGTTCCAAAGTTTTGGAGCATGTCAAGGGAGATATCGTGTTCAGGAATGTGAGCTTT AGGTACCCAGCAAGACCTGAAGTAACCATTTTTGACAGGCTGAGCCTGAAAGTGTCATCAGGGAAAAGCCTAGCAGTAGTGGGACAAAGTGGTTCAGGGA AAAGCACAATCATCTCTCTCATTTTACGATTCTATGACCCGATTTCTGGATCCATCCTAATTGACGGAAGCGATATCAAGACACTAAACCTGAAATCATT AAGGCAGAGGATAGGACTAGTCCAGCAGGAGCCAGCATTGTTCTCCACAACGATCTATGAAAACATCAAGTATGGAAATGACAGTGCATCGGAAATTGAA ATAATGGAAGCTGCCAAGGCTGCAAATGTTCATGGGTTCATAAGCAGGATGCCTGAAGGTTACAAAACACATGTGGGGAATAAAGGAATCCAGTTATCAG GTGGACAGAAGCAAAGAGTGGCTATTGCTAGAGCAATTCTGAAAGACCCTGCGATTCTTTTGCTGGACGAAGCAACGAGTGCATTAGACACGGCATCTGA GAAATTGGTGCAGGAAGCTCTTGATAAGCTGATGGAAGGTCGGACCACCGTCCTCGTTGCCCACAGGCTTTCGACAGTTCGCGACTCGAGCGCCATTGCG GTGATTCAGGATGGGAGAGTTATTGAGATTGGGAGCCATGACAAGCTGATTGAGAAACCTGAGAGCGTTTATAAACGGCTGCTTCTCGACTCTCAGATCT ACGGAATTCTTCTGCTGGCGGCGGTGAACTTTGTTGAAGACACTGAACCAGAGGCCACGAACCTGGAAGCACTCATTGTTGCTGCTGCGGAAGACTTTGT ACCAACTGTATTCGATAATTTCAGCGCAAATGTTGTGGTGGATGGAAGCACAATCAACTTGGGGTTGTGGGATACTGCCGGTCAGGAAGATTACAACAGA CTGAGCCCTCTTAGGTACCTAGGAGCAGATGTCTTTATTCTTACATCTTCTCTAATTAGCAAGGCTAGCTTTGCCAAAAAGTGGATTCCAGAACTTAGAC ATTATGCACCTGGGGTTCCAATTATCCTTGTTGGAACAAAACTAGATCTTCGTGACGATAGTCAGTTCTTCAATGACCATCCTGGTGCTGTGCCTATTAC TACTGCTCAGGGAGAGGAACTCCGGAAATTGATTGGAGCTTTGGCATACGTTGAATGTAGTTCTAAGACACAGCAGAATGTGAAGGCTGTGTTTGATGCG GCCATTAAGGTTGTGCTTCAACCTCCAAAGCAAAAGAAGAAAAAGAGAAAGGGACAGAAGAACTGTTCTATATTGTAA
AA sequence Show only first row Show all	>Lus10017271 pacid=23165773 polypeptide=Lus10017271 locus=Lus10017271.g ID=Lus10017271.BGIv1.0 annot-version=v1.0 MAELEQNTTSPLGEKPDQLKKPSSVSFFRMFSAADKVDYVLMFFGSVGACVHGAALPILFLLFGNLINSIGDMASNPHQQLTSRISKNALYFVYLGLVVF AAAWMGVAFWMQTGERQTARLRLKYLQTVLKQDMNFFDTEARDSNIIFHISSDTILVQDAIGDKTGHALRYLSQFIAGFALAFTSVWQLSLLTLAVVPVI AFAGGAYAITMTTLSEKGEFAYAEAGKIAEEVISQIRTIYAFVGEDKAIESYSKSLKKALKLGKKSGVAKGVGVGLTYALLFSAWSLLLWYSSILIRHKK TDGGKAFSTIINVIFSGFALGQAAPNLSAISKGRAAAASILAMIESGSSSESSKPYEAGLVMLPNVSGEIEFCEVSFAYPSRPDSLVFENLSFLISAAKT FAFVGPSGSGKSTIISMVQRFYDPISGRILLDGHDVKSLRLKWLRQQMGLVSQEPALFGTTISENILFSKEDASMEQIFQAAKAANAHSFIQQLPDGYST QVGEGGIQLSGGQKQRIAIARAVLRNPKILLLDEATSALDTESEHVVQQALDKIMSDRTTIVVAHRLSTVRNVDTIMVLKHGQVVESGSHSDLMSKSGEY ATLVRLQASETSSNSFNDSASIVGASFRESFNSQRSLPDSKSGQGPHSSDEKSSGSMLQLLKLNAPDWPYAVLGSLGAILTGIEAPLFALGLSHVLSAYY SPNMNEMKNEVNRVALMFVALAAISIPTYLLQHYFYTVMGELVTTRVRLSMFKAILSNEIGWFDLEENNTGSLSSALAAEATLVRSAVAERLSTIVQNLA LIVTACSLSFALCWRVAAVVVATFPLLLGATLAEQLFLKGFGGDYRSYSRANSVASEGIANIRTVAAFGGEDKVASQFSFELSKPKKQAFLRGHVSGFGY GLSQLLCFSSYALGLWYASVVIKEKHSSFGHAMKSFLILVVTSFGMAETLALAPDIVKGSQALGSVFSILNRKTTIENNVGGSKVLEHVKGDIVFRNVSF RYPARPEVTIFDRLSLKVSSGKSLAVVGQSGSGKSTIISLILRFYDPISGSILIDGSDIKTLNLKSLRQRIGLVQQEPALFSTTIYENIKYGNDSASEIE IMEAAKAANVHGFISRMPEGYKTHVGNKGIQLSGGQKQRVAIARAILKDPAILLLDEATSALDTASEKLVQEALDKLMEGRTTVLVAHRLSTVRDSSAIA VIQDGRVIEIGSHDKLIEKPESVYKRLLLDSQIYGILLLAAVNFVEDTEPEATNLEALIVAAAEDFVPTVFDNFSANVVVDGSTINLGLWDTAGQEDYNR LSPLRYLGADVFILTSSLISKASFAKKWIPELRHYAPGVPIILVGTKLDLRDDSQFFNDHPGAVPITTAQGEELRKLIGALAYVECSSKTQQNVKAVFDA AIKVVLQPPKQKKKKRKGQKNCSIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27940		ABCB13, PGP13	ATP-binding cassette B13, P-gl...		Lus10017271 [exp]	0	1
					Lus10022823 [exp]	4.6	0.8141
AT1G69710			Regulator of chromosome conden...		Lus10036737 [exp]	5.7	0.7648
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009620 [exp]	6.3	0.7938
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10015712 [exp]	8.0	0.7763
AT4G31690	B3	REM9	Transcriptional factor B3 fami...		Lus10042406 [exp]	14.1	0.7862
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031254 [exp]	14.3	0.7753
AT3G13220		MSR02, AtABCG26...	ATP-binding cassette G26, ABC-...		Lus10022564 [exp]	16.1	0.6774
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009621 [exp]	17.0	0.7716
AT1G27940		ABCB13, PGP13	ATP-binding cassette B13, P-gl...		Lus10017270 [exp]	19.1	0.7673
AT5G52100		CRR1	chlororespiration reduction 1,...		Lus10027421 [exp]	34.2	0.7625

Compare expression of checked genes

Lus10017271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.