Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75850 1254 / 0 VPS35B VPS35 homolog B (.1) AT2G17790 1118 / 0 ZIP3, VPS35A ZIG suppressor 3, VPS35 homolog A (.1) AT3G51310 1061 / 0 VPS35C VPS35 homolog C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013565 [exp] 1556 / 0 AT1G75850 1306 / 0.0 VPS35 homolog B (.1) Lus10041880 [exp] 1191 / 0 AT2G17790 1261 / 0.0 ZIG suppressor 3, VPS35 homolog A (.1) Lus10028427 [exp] 1190 / 0 AT2G17790 1270 / 0.0 ZIG suppressor 3, VPS35 homolog A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G242100 [exp] 1304 / 0 AT1G75850 1309 / 0.0 VPS35 homolog B (.1) Potri.002G019400 [exp] 1301 / 0 AT1G75850 1271 / 0.0 VPS35 homolog B (.1) Potri.005G110600 [exp] 1246 / 0 AT2G17790 1249 / 0.0 ZIG suppressor 3, VPS35 homolog A (.1) Potri.007G061520 [exp] 127 / 7e-35 AT1G75850 119 / 8e-33 VPS35 homolog B (.1) Potri.007G061540 [exp] 0 / 1 AT2G17790 0 / 1 ZIG suppressor 3, VPS35 homolog A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03635 [flax] [poplar] Vps35 Vacuolar protein sorting-associated protein 35
Representative CDS sequence Show only first row Show all	>Lus10017272 pacid=23165815 polypeptide=Lus10017272 locus=Lus10017272.g ID=Lus10017272.BGIv1.0 annot-version=v1.0 ATGTTGATCGGAATCGAGGACGAAGAGAAATGGCTTGCTGAAGCAATCGCCGGCGTTCAGCAGAACGCTTTGTTCATGCATCGCGCTTTGGACGCTAATA ATCTTAGAGATGCTCTAAAGTACTCAGCTCAGATGCTGTCCGAGCTTCGAACGTCTAAGCTATCGCCTCACAACTACTATGAACTCTATATGCGAGCTTT TGATGAACTGGGAAAGTTGGAGATGTTCTTCAAGGATGAGAGCAGGCACGGAGTTTCAGTCGTTGATTTGTATGAACTTGTACACCACGCTGGCAACATA TTGCCTAGAATGTATCTCCTCTGTACGGTAGGATCTATTTATATGAAGTCGAAGGAAGCTCCGCCGAAAGATGTGCTTAAGGATCTTGTAGAAATGTGCA GGGGTGTTCAACATCCCATACGTGGATTATTTCTCAGGAGTTATCTCGTTCAAGTTAGCAGGGAAAATTTACCAGATATTGGCTCTGAGATTGGAAGGGA TAAAGATGGAAGCAGTATCATGGATGCTATAGAATTTGTGCTTCAGAATTTCATTGAGATGAATAAACTTTGGGTCCGACTGCAATTTCAGGGACCTGGG CAGGACAGAGACAAGCGGGAAAAGGAGAGAACCGAGCTTCGTGATCTTGTGGGAAAGAATCTTCATATTCTTAGTCAACTAGAGGGAGTGGACCTTGACG TATACCGAGAAAATGTTCTTCCTAGAGTCTTAGAGCAGGTTGTCAATTGTAAAGACGAACTGGCACAGTATTACTTGATGGATTGCATAATTCAGGTTTT TCCAGATGAGTACCATTTGCAGAGCCTAGAGACATTATTGGGAGCTTGTCCCCATCTTCAGCCAGGCGTAGACATCAAGACTGTGCTGTCTCAGTTGATG GACAGATTGTCTAATTATGCAGCCTCCAGTCCAGATGTTTTGCCTGACTTCTTGCAAGTAGAAGCTTTTGCTAAATTAAGCAGCGCTATTGGAAAGGTTA TAGAATCACAAGTTGACATGCCGATTGTTGGAGCCATCACTTTATATGTGTCTCTACTTACATTTACACTTCGCGTTCATCCAGATCGTTTGGACTATGT TGATCAAATACTGGGTGCATGTGTGAAGAAGCTTGCTGGGAAGCCTAGGCTTGATGACAAAAGAGCTACAAAACAAATTGTTGTACTCCTAAGTGCTCCG CTGGAGAAGTACAATGATACTGTCACTGCTTTAACACTTTCAAATTATCCGCGTGTCATGGACCACCTGGATAATGAAACAAATAAAGTCATGGCAATGG TTATAATTCAAAGCATCATGAAGAACAGTATCTGCATTTCCACTGCTGATAAAGCTGAGGTTTTGTTTGAGTTAATCAAAGGTCTTATAACGGATTTGGA TGAAACTACTACAGATGAGCTTGACGAGGAAGATTTCAAGGAAGAACAGAATTCTGTTGCTCGCCTTATTAACATGTTATATAATGACGACCCAGAAGAA ATGTTGGAGATCATTTACACAGTAAGTAGGCATATCATGAATGGCGGGCCAAAGCGCTTGCCTTTTACAGTTCCTCCTCTAGTGTTTTCTGCACTAATGC TTATTAGATGCTTGGAAGGTCAGGATGGAGATGTCGTGGGCAAGGAATTGCCAGCAACACCGAAGGCAATTTTCCAGCTCCTGAATCAGACTATTGAAGC TCTTTCAGTTGTCCCATCACCTGAGCTGGCATTAAGGCTGTTCTTGCAATGTGCTGAGGCAGCTAACGACTGTGACCTTGAGCCAGTTGCATATGATTTT TTCACCCAGGCACATGTGTTGTATGAGGAAGAAATTGCGGATTCCAAGGCCCAGGTGACTGCTATACATCTTATCATCGGAACACTCCAGAGGATGCACG TATTTGGGGTTGAAAACAGGGATACGTTGACTCACAAAGCCACAGGATATTCGGCGAAGCTTTTGAAGAAACCTGATCAATGTCGAGCAGTTTATGCATG CTCCCACCTGTTTTGGGTTGATGATCAGGAAGGAATCAAGGACGGAGAAAGGGTATTGCTGTGCCTGAAGCGTGCGTTGAGGATTGCAAATGCAGCCCAG CAAATGGCCAATGCTGCCAGGGGGAGTAGCGGGCCGGTTACACTTTTTGTCGAAATACTAAACAAGTATCTATACTTCTTTGAGAAAGGAAATCCACAGA TCACAAGTAATATGATCCAGGATCTGGTCGAGCTGATAACCGAAGAGATGCAAAGTGACTCTGTTACCACCGATCCAGCATCAGATGCTTTCTTTGCCAG CACGCTGCGGTACATCCGATTTCAGAAACAGAAAGGTGGTACCGTAGGTGAGAAATTTGAACCAATATCTATCTAA
AA sequence Show only first row Show all	>Lus10017272 pacid=23165815 polypeptide=Lus10017272 locus=Lus10017272.g ID=Lus10017272.BGIv1.0 annot-version=v1.0 MLIGIEDEEKWLAEAIAGVQQNALFMHRALDANNLRDALKYSAQMLSELRTSKLSPHNYYELYMRAFDELGKLEMFFKDESRHGVSVVDLYELVHHAGNI LPRMYLLCTVGSIYMKSKEAPPKDVLKDLVEMCRGVQHPIRGLFLRSYLVQVSRENLPDIGSEIGRDKDGSSIMDAIEFVLQNFIEMNKLWVRLQFQGPG QDRDKREKERTELRDLVGKNLHILSQLEGVDLDVYRENVLPRVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQSLETLLGACPHLQPGVDIKTVLSQLM DRLSNYAASSPDVLPDFLQVEAFAKLSSAIGKVIESQVDMPIVGAITLYVSLLTFTLRVHPDRLDYVDQILGACVKKLAGKPRLDDKRATKQIVVLLSAP LEKYNDTVTALTLSNYPRVMDHLDNETNKVMAMVIIQSIMKNSICISTADKAEVLFELIKGLITDLDETTTDELDEEDFKEEQNSVARLINMLYNDDPEE MLEIIYTVSRHIMNGGPKRLPFTVPPLVFSALMLIRCLEGQDGDVVGKELPATPKAIFQLLNQTIEALSVVPSPELALRLFLQCAEAANDCDLEPVAYDF FTQAHVLYEEEIADSKAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQEGIKDGERVLLCLKRALRIANAAQ QMANAARGSSGPVTLFVEILNKYLYFFEKGNPQITSNMIQDLVELITEEMQSDSVTTDPASDAFFASTLRYIRFQKQKGGTVGEKFEPISI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10017272 [exp]	0	1
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10013565 [exp]	1.0	0.9623
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10036406 [exp]	2.4	0.9361
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10041081 [exp]	3.5	0.9263
AT1G09980			Putative serine esterase fami...		Lus10038351 [exp]	4.9	0.8705
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Lus10023422 [exp]	5.4	0.8410
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10041170 [exp]	5.5	0.8894
AT5G06120			ARM repeat superfamily protein...		Lus10041603 [exp]	6.0	0.9050
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10009324 [exp]	7.0	0.8739
AT1G04910			O-fucosyltransferase family pr...		Lus10037830 [exp]	9.2	0.8576
AT5G19670			Exostosin family protein (.1)		Lus10012973 [exp]	10.4	0.8479

Compare expression of checked genes

Lus10017272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.