Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35030 301 / 7e-96 Protein kinase superfamily protein (.1.2.3) AT1G77280 297 / 7e-91 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G16750 293 / 9e-91 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G63940 290 / 5e-89 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 280 / 2e-84 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G68690 229 / 4e-66 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT3G24540 223 / 1e-65 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT5G38560 224 / 1e-64 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT5G37790 221 / 1e-64 Protein kinase superfamily protein (.1) AT1G52290 220 / 2e-64 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013566 [exp] 839 / 0 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3) Lus10000968 [exp] 295 / 2e-90 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10028661 [exp] 293 / 1e-89 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10014122 [exp] 285 / 2e-87 AT2G16750 507 / 4e-173 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10019787 [exp] 285 / 3e-87 AT2G16750 513 / 4e-175 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10039518 [exp] 278 / 1e-84 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024154 [exp] 278 / 3e-84 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10013014 [exp] 226 / 2e-67 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10022129 [exp] 232 / 3e-67 AT3G24550 474 / 3e-159 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G019300 [exp] 414 / 6e-135 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.004G175100 [exp] 340 / 3e-108 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.009G134700 [exp] 337 / 4e-107 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G077900 [exp] 296 / 1e-90 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 294 / 8e-90 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G102400 [exp] 287 / 1e-87 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 286 / 2e-87 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G242800 [exp] 231 / 1e-66 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.013G028100 [exp] 224 / 4e-66 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.007G011700 [exp] 223 / 7e-66 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10017273 pacid=23165748 polypeptide=Lus10017273 locus=Lus10017273.g ID=Lus10017273.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCAGATTATCTGAAACGAGAAACTTCAGAGGAAATACTACTTATTTCTCAGCATATATTCTCTCGTTTCGTCTCCACGGTGGAGCTACTAA ACTATGAGGCTGCAGATGACAATTTGCCAGGGGAAGAAACAGAAGAATCAGTCTGCTTATGGAATCCTCCGCAGCACAGATTAATAATGCTTCCTTGTTC TAACAATCGGGTATGTACGAAGCAGATCAAGTTCAAATGCCATGGTTCGCGTTCAATAGCTGATGGAATCGATGTTCCTGTGAAGAAGTTTCGGAAGCAA TACGCAAACATGGCGGTGATTGTTGGAATCGAGCAGGAAACTGGTCTCCGGAGGAAGATTTTGCTGAGAAGACGCAGTTCAGGATTGGCCTCAAGGCTCC AACTGTACCTTGAACAGAACCAAAATAATGAAGATAACAAGTTTCTAATGGATGAAGGAAGCTCGGAGTATGAACGAGCAAAGGATGATGATGCAGAAGA AGAACATTGTGATCGTCCTCGGGATAAAATGTCGTCCAGACGAACTATCTCTATAATCAAGAGGGAACTTGAAGGGTCCTCATTTGGTTGGCCACTTCTC CGGAGGCAATTTGAACAAGGTCAAGGTGGTTGTGTCCTTGTGAGAGAATCATCTGGAACTGAAGAAGAAGAAGAAGAAGAAACATCGGCAGATTACTTTG CCATGAGTCTTCGTCCTGTCGGGTGCAGATTATTTAGCTACGGACAGCTCAAGAAAGCTACACGAGATTTCTCATCGGAGAGCTTGGTTGGAGAAGGAGG ATGTAGCAGTGTGTATAAAGGTGGCCTTCCTGATGGGAACTTAGTTGCAGTGAAGGTTTTGAAACAGTACAAGGAAGCCTGGAACGATTTCTCTTTAGAA GTTGAGATCATGTCTTCCGTAAAGCATCAACACATCACTCCCCTAATTGGTGTCTGCATTGACAAAAATTATCTGATGTTGGTCTATGACTTCTTGTCTA ATGGCAGCTTGGAGGATAGCTTGCAAGATGATAGCAAGAAGCTAAAACTGTCATGGGAAGCGAGGTTCAATGTGGCTGTTAAAGTTGCAGAAGCTCTGAA ATACTTGCATTGCGAATGTCCAACGCCAGTAATCCACAGAGATGTCAAATCTTCAAATATTCTCCTCTCCAGTGATCTTCAACCACAGCTATCCGATTTC GGGCTTGCTATACGGGGACCAACGGATTCGACCCATATGATTAATGACGACCTGGTTGGAACATTTGGGTACATAGCTCCCGAGTACTTTATGCATGGAA GAATGAGTGAGAAAGTAGATATCTACTCGTTTGGTATAGTTCTGCTGGAGTTGATCTCAGGAAGGAAACCAATCATCACAAATGGTTCCAAAGCACAAGA GAGCATAGTCAAATGGGCGATTCCGTTGATGGAAAGTGGGAATCACAGAGCTTTACTTGATCCAAAGTTGGCGGCTGATAAGGTGACTATTTCACAAATG GGGAAGATGGTTCTCGCAGCCAGTCTTTGCATAAAACCCTCTGCTAGATTGCGTCCACGAGCACACCAGATCGTTGAGCTCTTGAAGGGACACAAGGATG AAAAAGAGTGGATAAGCTCCTACATTAACTATTTGACAGAGACGAGCAATGACGATGAAGGTGGTGAAACAGCTCCTGGAGGGAATGACTATAAACCTTC TTTCAATCCTTCGCCACTGGTAATAACTTTGGACGATACAGCGAAGCTAGCAGTTGGCGCCGAGGCTAAGAAGCCAAGAAAAAAGTTGAAGGACTACTTG AAAGAAGAGCAGTTTTGA
AA sequence Show only first row Show all	>Lus10017273 pacid=23165748 polypeptide=Lus10017273 locus=Lus10017273.g ID=Lus10017273.BGIv1.0 annot-version=v1.0 MAASDYLKRETSEEILLISQHIFSRFVSTVELLNYEAADDNLPGEETEESVCLWNPPQHRLIMLPCSNNRVCTKQIKFKCHGSRSIADGIDVPVKKFRKQ YANMAVIVGIEQETGLRRKILLRRRSSGLASRLQLYLEQNQNNEDNKFLMDEGSSEYERAKDDDAEEEHCDRPRDKMSSRRTISIIKRELEGSSFGWPLL RRQFEQGQGGCVLVRESSGTEEEEEEETSADYFAMSLRPVGCRLFSYGQLKKATRDFSSESLVGEGGCSSVYKGGLPDGNLVAVKVLKQYKEAWNDFSLE VEIMSSVKHQHITPLIGVCIDKNYLMLVYDFLSNGSLEDSLQDDSKKLKLSWEARFNVAVKVAEALKYLHCECPTPVIHRDVKSSNILLSSDLQPQLSDF GLAIRGPTDSTHMINDDLVGTFGYIAPEYFMHGRMSEKVDIYSFGIVLLELISGRKPIITNGSKAQESIVKWAIPLMESGNHRALLDPKLAADKVTISQM GKMVLAASLCIKPSARLRPRAHQIVELLKGHKDEKEWISSYINYLTETSNDDEGGETAPGGNDYKPSFNPSPLVITLDDTAKLAVGAEAKKPRKKLKDYL KEEQF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35030			Protein kinase superfamily pro...		Lus10017273 [exp]	0	1
AT3G54200			Late embryogenesis abundant (L...		Lus10043084 [exp]	2.0	0.9723
					Lus10016839 [exp]	3.2	0.9748
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021318 [exp]	4.5	0.9691
AT5G10530			Concanavalin A-like lectin pro...		Lus10033781 [exp]	5.0	0.9653
AT5G01750			Protein of unknown function (D...		Lus10025253 [exp]	7.7	0.9708
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10041644 [exp]	15.1	0.9532
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10021196 [exp]	16.7	0.9377
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10013594 [exp]	18.5	0.9616
AT1G20030			Pathogenesis-related thaumatin...		Lus10004410 [exp]	19.7	0.9374
AT4G18380			F-box family protein (.1.2)		Lus10040978 [exp]	21.0	0.9464

Compare expression of checked genes

Lus10017273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.